; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014353 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014353
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 35 kDa protein
Genome locationscaffold19:169292..169631
RNA-Seq ExpressionMS014353
SyntenyMS014353
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067647.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo var. makuwa]8.4e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

KAG7029056.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]5.5e-3184.15Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNV+KVFYA N HP QAGSIDGT+ILPHDNAVYRALLCS+AGLYDPL DP VFGDPYCTLFVGRL H T E+ LRRVLS
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

XP_008439055.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Cucumis melo]8.4e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

XP_016899124.1 PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X2 [Cucumis melo]8.4e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

XP_022138184.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Momordica charantia]8.4e-3284.15Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        M+GSNVNKVF+A N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDPLGDP V GDPYCTLFVGRL H TDE+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

TrEMBL top hitse value%identityAlignment
A0A1S3AXF1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.1e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

A0A1S4DT11 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.1e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

A0A5A7VKF1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.1e-3285.37Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNVNKVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDP GDP VFGDPYCTLFVGRL H T E+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

A0A6J1C9C6 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.1e-3284.15Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        M+GSNVNKVF+A N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDPLGDP V GDPYCTLFVGRL H TDE+TLRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

A0A6J1IB25 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.5e-3182.93Show/hide
Query:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        MSGSNV+KVFYA N HP QAGSIDGT+ILPHDNAVYRALLCSSAGLYDPL DP VFGDPYCTLFVGRL H T E++LRR +S
Subjt:  MSGSNVNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

SwissProt top hitse value%identityAlignment
Q16560 U11/U12 small nuclear ribonucleoprotein 35 kDa protein3.0e-0851.56Show/hide
Query:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        +AGSIDGT+  PHD AV+RA+L      Y P  +  V GDP  TLFV RL  QT E+ L+ V S
Subjt:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

Q1LZH0 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.0e-0851.56Show/hide
Query:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        +AGSIDGT+  PHD AV+RA+L      Y P  +  V GDP  TLFV RL  QT E  L+ V S
Subjt:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

Q4KMD3 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.0e-0851.56Show/hide
Query:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        +AGSIDGT++ PHD  V+RA+L      Y P  +  V GDP  TLFV RL  QT E  LR V S
Subjt:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

Q5U1W5 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.0e-0851.56Show/hide
Query:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        +AGSIDGT+  PHD AV+RA+L      Y P  +  V GDP  TLFV RL  QT E  L+ V S
Subjt:  QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

Q8VY74 U11/U12 small nuclear ribonucleoprotein 35 kDa protein2.5e-2670.37Show/hide
Query:  GSN-VNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        G+N VNKVFYA + HP QAGSIDGT++ PHDN V RALLC +AGLYDP GD    GDPYCTLFVGRL H T E+TLR V+S
Subjt:  GSN-VNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

Arabidopsis top hitse value%identityAlignment
AT2G43370.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-2770.37Show/hide
Query:  GSN-VNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS
        G+N VNKVFYA + HP QAGSIDGT++ PHDN V RALLC +AGLYDP GD    GDPYCTLFVGRL H T E+TLR V+S
Subjt:  GSN-VNKVFYAANNHP-QAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS

AT3G50670.1 U1 small nuclear ribonucleoprotein-70K8.5e-0654.55Show/hide
Query:  YDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRR
        YDP  DPN  GDPY TLFV RL +++ E+ ++R
Subjt:  YDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRR

AT3G50670.2 U1 small nuclear ribonucleoprotein-70K8.5e-0654.55Show/hide
Query:  YDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRR
        YDP  DPN  GDPY TLFV RL +++ E+ ++R
Subjt:  YDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGGAGCAACGTCAACAAGGTTTTCTACGCCGCGAACAACCACCCCCAAGCCGGCAGCATCGACGGCACCAATATTCTTCCCCACGACAACGCCGTCTACCGGGC
GTTACTTTGTTCCTCCGCTGGCCTCTATGATCCACTTGGCGATCCCAATGTCTTCGGGGACCCCTATTGCACCCTCTTCGTTGGTCGCCTTAAGCATCAGACTGACGAAA
ACACTCTTCGCAGAGTATTGTCT
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGGAGCAACGTCAACAAGGTTTTCTACGCCGCGAACAACCACCCCCAAGCCGGCAGCATCGACGGCACCAATATTCTTCCCCACGACAACGCCGTCTACCGGGC
GTTACTTTGTTCCTCCGCTGGCCTCTATGATCCACTTGGCGATCCCAATGTCTTCGGGGACCCCTATTGCACCCTCTTCGTTGGTCGCCTTAAGCATCAGACTGACGAAA
ACACTCTTCGCAGAGTATTGTCT
Protein sequenceShow/hide protein sequence
MSGSNVNKVFYAANNHPQAGSIDGTNILPHDNAVYRALLCSSAGLYDPLGDPNVFGDPYCTLFVGRLKHQTDENTLRRVLS