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MS014477 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014477
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMYB transcription factor
Genome locationscaffold553:228376..228741
RNA-Seq ExpressionMS014477
SyntenyMS014477
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC19993.1 Transcription factor [Morus notabilis]1.5e-6194.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

PON54130.1 MYB transcription factor [Parasponia andersonii]1.5e-6194.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

POO03516.1 MYB transcription factor [Trema orientale]1.5e-6194.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

XP_010108682.2 myb-related protein A [Morus notabilis]1.5e-6194.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

XP_022144460.1 transcription factor MYB105-like, partial [Momordica charantia]2.7e-66100Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARKCREQFSAYRRRKLAQ
Subjt:  HVIMARKCREQFSAYRRRKLAQ

TrEMBL top hitse value%identityAlignment
A0A2P5BZB2 MYB transcription factor7.4e-6294.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

A0A2P5G0F7 MYB transcription factor7.4e-6294.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

A0A5B6WR15 Myb-like protein B9.7e-6294.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAED+KLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

A0A6J1CRP1 transcription factor MYB105-like1.3e-66100Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARKCREQFSAYRRRKLAQ
Subjt:  HVIMARKCREQFSAYRRRKLAQ

W9S0B1 Transcription factor7.4e-6294.26Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIA+KL+GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHR+YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRKLAQ
        HVIMARK REQ SAYRRRKL+Q
Subjt:  HVIMARKCREQFSAYRRRKLAQ

SwissProt top hitse value%identityAlignment
Q5NBM8 Transcription factor CSA7.4e-5988.24Show/hide
Query:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW
        Q KLCARGHWRPAEDAKLK+LVA YGPQNWNLIA+KL GRSGKSCRLRWFNQLDPRINRRAFTEEEEERLM AHR YGNKWA IARLFPGRTDNAVKNHW
Subjt:  QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHW

Query:  HVIMARKCREQFSAYRRRK
        HV+MAR+ REQ  A+RRRK
Subjt:  HVIMARKCREQFSAYRRRK

Q6R053 Transcription factor MYB564.4e-5182.57Show/hide
Query:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH
        +K+C+RGHWRP EDAKLKELVA +GPQNWNLI++ L GRSGKSCRLRWFNQLDPRIN+RAFTEEEE RL+ AHR YGNKWA I+RLFPGRTDNAVKNHWH
Subjt:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH

Query:  VIMARKCRE
        VIMAR+ RE
Subjt:  VIMARKCRE

Q9FX36 Transcription factor MYB541.5e-4879.44Show/hide
Query:  LCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVI
        +C+RGHWRPAED KLK+LV  YGP NWN IA KL GRSGKSCRLRWFNQLDPRINR  FTEEEEERL+ AHR++GN+W+ IARLFPGRTDNAVKNHWHVI
Subjt:  LCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVI

Query:  MARKCRE
        MAR+ R+
Subjt:  MARKCRE

Q9LQX5 Transcription factor MYB1171.3e-5891.23Show/hide
Query:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR
        RGHWRPAED KLKELV++YGPQNWNLIA+KLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDN+VKNHWHV+MAR
Subjt:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR

Query:  KCREQFSAYRRRKL
        K RE  SAYRRRKL
Subjt:  KCREQFSAYRRRKL

Q9SEZ4 Transcription factor MYB1057.4e-5992.11Show/hide
Query:  ARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMA
        +RGHWRPAED KLKELVA+YGPQNWNLIA+KLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDN+VKNHWHVIMA
Subjt:  ARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMA

Query:  RKCREQFSAYRRRK
        RK REQ S+YRRRK
Subjt:  RKCREQFSAYRRRK

Arabidopsis top hitse value%identityAlignment
AT1G26780.1 myb domain protein 1179.0e-6091.23Show/hide
Query:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR
        RGHWRPAED KLKELV++YGPQNWNLIA+KLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDN+VKNHWHV+MAR
Subjt:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR

Query:  KCREQFSAYRRRKL
        K RE  SAYRRRKL
Subjt:  KCREQFSAYRRRKL

AT1G26780.2 myb domain protein 1179.0e-6091.23Show/hide
Query:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR
        RGHWRPAED KLKELV++YGPQNWNLIA+KLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDN+VKNHWHV+MAR
Subjt:  RGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMAR

Query:  KCREQFSAYRRRKL
        K RE  SAYRRRKL
Subjt:  KCREQFSAYRRRKL

AT1G69560.1 myb domain protein 1055.3e-6092.11Show/hide
Query:  ARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMA
        +RGHWRPAED KLKELVA+YGPQNWNLIA+KLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWA IARLFPGRTDN+VKNHWHVIMA
Subjt:  ARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMA

Query:  RKCREQFSAYRRRK
        RK REQ S+YRRRK
Subjt:  RKCREQFSAYRRRK

AT3G29020.1 myb domain protein 1108.4e-5071.79Show/hide
Query:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH
        S++C+RGHWR +ED +L ELV++YGPQNWN IA+ +QGR+GKSCRLRWFNQLDPRIN+RAF++EEEERL+ AHR +GNKWA IA+LF GRTDNA+KNHWH
Subjt:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH

Query:  VIMARKCREQFSAYRRR
        V+MARK R+Q S+Y +R
Subjt:  VIMARKCREQFSAYRRR

AT5G17800.1 myb domain protein 563.1e-5282.57Show/hide
Query:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH
        +K+C+RGHWRP EDAKLKELVA +GPQNWNLI++ L GRSGKSCRLRWFNQLDPRIN+RAFTEEEE RL+ AHR YGNKWA I+RLFPGRTDNAVKNHWH
Subjt:  SKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWH

Query:  VIMARKCRE
        VIMAR+ RE
Subjt:  VIMARKCRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGTCGAAGCTGTGCGCCAGAGGCCACTGGAGGCCCGCGGAGGACGCCAAGCTCAAGGAACTGGTGGCTCTCTACGGCCCTCAGAACTGGAACCTCATAGCCGACAAGCT
CCAGGGCAGATCCGGAAAAAGTTGCAGGCTCAGATGGTTCAACCAGTTGGACCCGAGGATCAACCGCAGAGCCTTCACGGAAGAGGAGGAGGAGCGGCTAATGCAGGCCC
ATAGACTCTACGGCAACAAGTGGGCCTGCATTGCCAGGCTTTTCCCTGGGAGGACTGATAATGCTGTTAAGAATCATTGGCATGTTATAATGGCTAGAAAATGCAGAGAA
CAGTTCAGTGCTTACAGGCGGCGGAAGCTCGCCCAG
mRNA sequenceShow/hide mRNA sequence
CAGTCGAAGCTGTGCGCCAGAGGCCACTGGAGGCCCGCGGAGGACGCCAAGCTCAAGGAACTGGTGGCTCTCTACGGCCCTCAGAACTGGAACCTCATAGCCGACAAGCT
CCAGGGCAGATCCGGAAAAAGTTGCAGGCTCAGATGGTTCAACCAGTTGGACCCGAGGATCAACCGCAGAGCCTTCACGGAAGAGGAGGAGGAGCGGCTAATGCAGGCCC
ATAGACTCTACGGCAACAAGTGGGCCTGCATTGCCAGGCTTTTCCCTGGGAGGACTGATAATGCTGTTAAGAATCATTGGCATGTTATAATGGCTAGAAAATGCAGAGAA
CAGTTCAGTGCTTACAGGCGGCGGAAGCTCGCCCAG
Protein sequenceShow/hide protein sequence
QSKLCARGHWRPAEDAKLKELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWACIARLFPGRTDNAVKNHWHVIMARKCRE
QFSAYRRRKLAQ