CuGenDBv2

Gene ID	MS014519
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sister chromatid cohesion protein
Genome location	scaffold553:570527..572975
RNA-Seq Expression	MS014519
Synteny	MS014519
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process) GO:0061780 - mitotic cohesin loading (biological process) GO:0071169 - establishment of protein localization to chromatin (biological process) GO:1990414 - replication-born double-strand break repair via sister chromatid exchange (biological process) GO:0090694 - Scc2-Scc4 cohesin loading complex (cellular component) GO:0003682 - chromatin binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR033031 - Scc2/Nipped-B family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022144452.1 sister chromatid cohesion protein SCC2 isoform X1 [Momordica charantia]

1.9e-150

98.26

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
        +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE

Query:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
        PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
Subjt:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ

Query:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Subjt:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

XP_022144453.1 sister chromatid cohesion protein SCC2 isoform X2 [Momordica charantia]

1.9e-150

98.26

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
        +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE

Query:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
        PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
Subjt:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ

Query:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Subjt:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

XP_022948643.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata]

1.1e-126

87.5

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Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF YT PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRDETSSVRTDSSELQD+TLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

XP_022998260.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima]

3.3e-126

87.14

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Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF Y  PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRDE SSVRTDSSELQDTTLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

XP_023523709.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita pepo subsp. pepo]

2.0e-126

87.14

Show/hide

Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF YT PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAP+SSSRKVKVKKKGRDETSSVRTDSSELQD TLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CTA5 Sister chromatid cohesion protein

9.4e-151

98.26

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
        +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE

Query:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
        PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
Subjt:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ

Query:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Subjt:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

A0A6J1CTQ8 Sister chromatid cohesion protein

9.4e-151

98.26

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
        +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVE

Query:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
        PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ
Subjt:  PFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQ

Query:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Subjt:  DTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

A0A6J1G9V6 Sister chromatid cohesion protein

5.6e-127

87.5

Show/hide

Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF YT PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRDETSSVRTDSSELQD+TLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

A0A6J1K9S4 Sister chromatid cohesion protein

1.6e-126

87.14

Show/hide

Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF Y  PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRDE SSVRTDSSELQDTTLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

A0A6J1KC20 Sister chromatid cohesion protein

1.6e-126

87.14

Show/hide

Query:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE
        S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVLAQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+E
Subjt:  SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKE

Query:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF
        VLRYD DAF Y  PGPIMEHVSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRDE SSVRTDSSELQDTTLANF
Subjt:  VLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANF

Query:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV
        C+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Subjt:  CEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV

SwissProt top hits

e value

%identity

Alignment

A5HEI1 Sister chromatid cohesion protein SCC2

2.5e-60

43.81

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE
        ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     G  +   +++LAQS +IA++L  TDVSYL+LR +A A   
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE

Query:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------
         S E F+LY  VLR +  AF Y  PGP  + + ++    + + E  +P++ + + D                R N  + H  +    TN +P        
Subjt:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------

Query:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT
                 +S+S+K K KKK +D+ SSV+ D S LQ++ + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Subjt:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT

Query:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL
        RLLR LDHQIHRAEGLS+  E  +  S+LL+
Subjt:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL

Arabidopsis top hits

e value

%identity

Alignment

AT5G15540.1 PHD finger family protein

1.8e-61

43.81

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE
        ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     G  +   +++LAQS +IA++L  TDVSYL+LR +A A   
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE

Query:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------
         S E F+LY  VLR +  AF Y  PGP  + + ++    + + E  +P++ + + D                R N  + H  +    TN +P        
Subjt:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------

Query:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT
                 +S+S+K K KKK +D+ SSV+ D S LQ++ + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Subjt:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT

Query:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL
        RLLR LDHQIHRAEGLS+  E  +  S+LL+
Subjt:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL

AT5G15540.2 PHD finger family protein

1.9e-58

43.2

Show/hide

Query:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE
        ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     G  +   +++LAQS +IA++L  TDVSYL+LR +A A   
Subjt:  ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSE

Query:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------
         S E F+LY  VLR +  AF+ +  GP  + + ++    + + E  +P++ + + D                R N  + H  +    TN +P        
Subjt:  GSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKHKLE-SIQTNDAP--------

Query:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT
                 +S+S+K K KKK +D+ SSV+ D S LQ++ + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Subjt:  ---------ISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT

Query:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL
        RLLR LDHQIHRAEGLS+  E  +  S+LL+
Subjt:  RLLRVLDHQIHRAEGLSV--EECEHVSMLLL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

GCCTCTGCCGGCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCCACCGCGGCATCGGCCTCTCCAATACTATTCACTCAGAGGTTGCTCCCTGCCTCCCCTTGCCTTC
GCTTCCGGTCTTCTTTGGCGCCTCCGAGCAAGAGCTCAGGCTATTCGATGAGCCGCCCGGGAGCTATGCTACTTCCACCAATGATGTTCTCGCTCAGTCCAAAAAGATCG
CTGATCTGCTTCGGGCGACTGACGTCTCTTACTTAAATCTAAGAGAAGATGCTGAGGCTCTTTCAGAAGGGTCTGTGGAGCCTTTTGAACTCTATAAGGAAGTTCTTCGC
TATGATGCTGATGCCTTCAATTATACTGCTCCAGGTCCTATTATGGAGCATGTCTCTAGCAGTACAGTATCTGATAGGAAAGTATTTGAGCAAAAACTACCTATTAGAAG
TAAAGATGAAGGAGACTGCAGAATAAATCAAAATCAAAAGCATAAGCTTGAATCTATTCAAACTAATGATGCACCAATATCATCTTCTAGAAAAGTCAAAGTAAAGAAGA
AAGGCAGAGATGAAACGTCTTCTGTTAGAACAGATTCTTCTGAGCTTCAAGACACCACCCTTGCAAATTTTTGCGAGTTTTTAGAGGAGTTTTGTGGGAGAGCTGAAATT
GTCAGTGATGACCGTGATGAATCAGAGTGGCTGGCACTGCCTCTTACTGATCTAAGAGTGCTTGTCAATGAAATAATGTCCATTCGTTCAAAGAAACTTCTTCATTTGGT
TTCTCTAGATAACCTGACGAGGCTGTTGAGGGTTTTAGATCATCAGATACATAGAGCAGAAGGATTGTCTGTAGAAGAATGTGAGCATGTGAGTATGCTACTTTTGTGCT
ATGGTTTTTCACTGTTT

mRNA sequence

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Protein sequence

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ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLR
YDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEI
VSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHVSMLLLCYGFSLF

MS014519 (gene) of Bitter gourd (TR) v1 genome