; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014560 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014560
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationscaffold553:884606..885434
RNA-Seq ExpressionMS014560
SyntenyMS014560
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607085.1 Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4686.78Show/hide
Query:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI
        MA KEE QLPN DELA+SLNEFFTSVS+MIKSDLLGSSNQLALLEKMN+RVAEEYKG GDVASGMRVFVEQLK+KSGGFD YI+QIE IE+QVTEFEAVI
Subjt:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI

Query:  SMLDKHVSSLESKVLSVYQNT
        SMLDKH+S LESKVLSV QN+
Subjt:  SMLDKHVSSLESKVLSVYQNT

XP_004137147.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus]2.1e-5090.08Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS
        MA KEE+LPNRD+LA+SLNEFFTSVS+MIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI+QIE IEHQVTEFEAVIS
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS

Query:  MLDKHVSSLESKVLSVYQNTP
        MLDKHVS LESKVLSV QNTP
Subjt:  MLDKHVSSLESKVLSVYQNTP

XP_008455567.1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo]1.7e-4989.26Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS
        MA KEE+LPNRDELA+SLNEFFTSVS+MIKSDLLGSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFD YI QIE IEHQVTEFEAVIS
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS

Query:  MLDKHVSSLESKVLSVYQNTP
        MLDKHVS LESKVLSV QNTP
Subjt:  MLDKHVSSLESKVLSVYQNTP

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]8.1e-4787.6Show/hide
Query:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI
        MA KEE QLPN DELA+SLNEFFTSVS+MIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFD YI+QIE IE+QVTEFEAVI
Subjt:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI

Query:  SMLDKHVSSLESKVLSVYQNT
        SMLDKH+S LESKVLSV QN+
Subjt:  SMLDKHVSSLESKVLSVYQNT

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]9.3e-5191.74Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS
        MA KEEQ PNRDELA+SLNEFFTSVS+MIKSDLLGSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI QIE IEHQVTEFEAVIS
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS

Query:  MLDKHVSSLESKVLSVYQNTP
        MLDKHVS LESKVLSV QNTP
Subjt:  MLDKHVSSLESKVLSVYQNTP

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein1.0e-5090.08Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS
        MA KEE+LPNRD+LA+SLNEFFTSVS+MIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFD YI+QIE IEHQVTEFEAVIS
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS

Query:  MLDKHVSSLESKVLSVYQNTP
        MLDKHVS LESKVLSV QNTP
Subjt:  MLDKHVSSLESKVLSVYQNTP

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 28.5e-5089.26Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS
        MA KEE+LPNRDELA+SLNEFFTSVS+MIKSDLLGSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLKSKSGGFD YI QIE IEHQVTEFEAVIS
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVIS

Query:  MLDKHVSSLESKVLSVYQNTP
        MLDKHVS LESKVLSV QNTP
Subjt:  MLDKHVSSLESKVLSVYQNTP

A0A6J1DL99 biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X46.1e-4098.9Show/hide
Query:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
        MAGKEEQLPNRDELA SLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ
Subjt:  MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQ

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 23.9e-4787.6Show/hide
Query:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI
        MA KEE QLPN DELA+SLNEFFTSVS+MIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFD YI+QIE IE+QVTEFEAVI
Subjt:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI

Query:  SMLDKHVSSLESKVLSVYQNT
        SMLDKH+S LESKVLSV QN+
Subjt:  SMLDKHVSSLESKVLSVYQNT

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 23.9e-4787.6Show/hide
Query:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI
        MA KEE QLPN DELA+SLNEFFTSVS+MIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLK+KSGGFD YI+QIE IE+QVTEFEAVI
Subjt:  MAGKEE-QLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVI

Query:  SMLDKHVSSLESKVLSVYQNT
        SMLDKH+S LESKVLSV QN+
Subjt:  SMLDKHVSSLESKVLSVYQNT

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 22.2e-3161.82Show/hide
Query:  NRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVSSL
        +RD+LA+SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE QV+EFEAVIS+LD++VS L
Subjt:  NRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVSSL

Query:  ESKVLSVYQN
        ESK+ + Y++
Subjt:  ESKVLSVYQN

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 29.7e-1133.94Show/hide
Query:  LPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVS
        LP  ++L +S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y  +I  ++  VT+ E  + +LD++  
Subjt:  LPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVS

Query:  SLESKVLSV
         LE KV ++
Subjt:  SLESKVLSV

Q95XD3 Biogenesis of lysosome-related organelles complex 1 subunit 21.2e-0528.32Show/hide
Query:  LPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVS
        +P+  +LAD++ +    V Q  +  L GS  +  LLE MN   A+ Y     VA  +   ++ L  K      Y+SQI+ ++      E   ++L+ +V+
Subjt:  LPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVS

Query:  SLESKVLSVYQNT
         LESK+ ++ Q +
Subjt:  SLESKVLSVYQNT

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.1.6e-3261.82Show/hide
Query:  NRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVSSL
        +RD+LA+SL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+KSKSGG D ++ Q++ IE QV+EFEAVIS+LD++VS L
Subjt:  NRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVSSL

Query:  ESKVLSVYQN
        ESK+ + Y++
Subjt:  ESKVLSVYQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGACTCGCTCAACGAATTCTTCACCAGCGTATCCCAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGAATGAGGGTTTTCGTGGAGCAACTGAAGTCGA
AGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCTCGCTGGAG
TCTAAAGTGTTGTCCGTTTATCAAAACACACCT
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGGAAAGAGGAACAATTGCCCAACAGGGACGAGCTCGCCGACTCGCTCAACGAATTCTTCACCAGCGTATCCCAAATGATCAAATCGGACCTTCTTGGATCAAG
TAATCAGCTGGCACTTTTGGAGAAAATGAATCTCAGGGTGGCAGAAGAGTATAAAGGTTTTGGGGACGTGGCTTCTGGAATGAGGGTTTTCGTGGAGCAACTGAAGTCGA
AGAGTGGTGGCTTTGATGCTTATATTAGCCAGATTGAGAATATAGAACATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCTCGCTGGAG
TCTAAAGTGTTGTCCGTTTATCAAAACACACCT
Protein sequenceShow/hide protein sequence
MAGKEEQLPNRDELADSLNEFFTSVSQMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDAYISQIENIEHQVTEFEAVISMLDKHVSSLE
SKVLSVYQNTP