CuGenDBv2

Gene ID	MS014611
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S21
Genome location	scaffold1096:66844..68789
RNA-Seq Expression	MS014611
Synteny	MS014611
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0006470 - protein dephosphorylation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004722 - protein serine/threonine phosphatase activity (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

2.1e-38

98.78

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]

6.1e-38

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]

9.4e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]

2.7e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

6.1e-38

96.34

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GH+DENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7W3 40S ribosomal protein S21

1.0e-38

98.78

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A1S4DSM1 40S ribosomal protein S21

1.0e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A5D3CXC9 40S ribosomal protein S21

1.0e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1CCB6 40S ribosomal protein S21

1.3e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

A0A6J1CCM4 40S ribosomal protein S21

4.5e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

3.8e-35

81.71

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGHVDENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-2

5.4e-37

85.19

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S21

1.6e-33

77.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGH+D NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-1

7.7e-36

80.49

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S21

1.2e-25

69.33

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GHVD N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

5.5e-37

80.49

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e

5.5e-37

80.49

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e

3.8e-38

85.19

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCTGCGACGAATCGGCTTATTACTTCAAAGGACCATGCTTCTGTTCAGATCAACATTGG
GCATGTGGATGAGAATGGCATCTACACCGGCCAGTTCTCCACTTTTGCTCTTTGTGGTTTCATTAGAGCCCAGGGAGATGCTGACAGTGCCCTGGATCGGCTCTGGCAGA
AGAAGAAAGTCGAAGTGCGTCAACAA

mRNA sequence

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Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

MS014611 (gene) of Bitter gourd (TR) v1 genome