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MS014631 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014631
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDynein light chain
Genome locationscaffold1096:187186..189154
RNA-Seq ExpressionMS014631
SyntenyMS014631
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138126.1 dynein light chain 1, cytoplasmic [Momordica charantia]2.0e-58100Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.1e-5287.18Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN D+KR+NP+ LMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]1.8e-5188.03Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN D+KR+NP SLMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022979977.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]1.4e-4884.62Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNQ++KR+NP  LMVKPESEDRK SS    A+K+VIKSADMFG MQKEAVDIAIAAFEK++VEKDVAEQIK+EFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038904701.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]1.1e-4881.2Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNQ++ R+NP  LMVKPES+DRKPSSA  +++K+VIKSADMF DMQKEA+DIAIAAFEK++VEKD+AEQIK++FDK HGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain9.6e-59100Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1G0U9 Dynein light chain1.0e-5287.18Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN D+KR+NP+ LMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1GVA3 Dynein light chain3.4e-4884.75Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSS-APPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETN
        MNQ++KR+NP  LMVKPESEDRK SS A   A+K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAE IK+EFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSS-APPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1IC60 Dynein light chain8.7e-5288.03Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN D+KR+NP SLMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1IQ69 Dynein light chain6.9e-4984.62Show/hide
Query:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNQ++KR+NP  LMVKPESEDRK SS    A+K+VIKSADMFG MQKEAVDIAIAAFEK++VEKDVAEQIK+EFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic3.7e-3170.93Show/hide
Query:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        RK VIK+ADM  DMQ++A+D A  A EKY +EKD+A  IK+EFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic3.7e-3172.09Show/hide
Query:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        RK VIK+ADM  DMQ++AVD A  A EKY +EKD+A  IK+EFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic3.7e-3172.09Show/hide
Query:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        RK VIK+ADM  DMQ++AVD A  A EKY +EKD+A  IK+EFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic3.7e-3172.09Show/hide
Query:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        RK VIK+ADM  DMQ++AVD A  A EKY +EKD+A  IK+EFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic3.7e-3172.09Show/hide
Query:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        RK VIK+ADM  DMQ++AVD A  A EKY +EKD+A  IK+EFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  RKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1343.02Show/hide
Query:  VVIKSADMFGDMQKEAVDIA---IAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        V ++++DM    Q  A  ++   + A    A  K +A  +K++FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  VVIKSADMFGDMQKEAVDIA---IAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.3e-1239.77Show/hide
Query:  LARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVE--KDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        L  K +++ +DM   MQ +A+  A  A + + V   K +A  IK+EFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  LARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVE--KDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT3G16120.1 Dynein light chain type 1 family protein1.5e-1138.64Show/hide
Query:  LARKVVIKSADMFGDMQKEAVDIAIAAFEKYAV--EKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        L  K  ++  DM   MQ +A+ IA  + + + V     +A  IK+EFD+R+G  W C+VG NFG + TH    F+YF+L     L+FK
Subjt:  LARKVVIKSADMFGDMQKEAVDIAIAAFEKYAV--EKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein4.4e-4074.76Show/hide
Query:  EDRKPS-----SAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF
        +DR+ S     ++PP  ++ VIKSADM  DMQKEA++IAI+AFEKY+VEKD+AE IK+EFDK+HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF
Subjt:  EDRKPS-----SAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF

Query:  KSG
        KSG
Subjt:  KSG

AT5G20110.1 Dynein light chain type 1 family protein1.3e-1550Show/hide
Query:  VVIKSADMFGDMQKEAVDIA---IAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        V I +ADM G MQ  A   A   + + EK++  K +A  +K+EFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  VVIKSADMFGDMQKEAVDIA---IAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAGACGCCAAGAGAACCAATCCTGCATCTCTAATGGTGAAACCCGAATCTGAGGATCGCAAACCCTCCTCCGCGCCACCCCTCGCCCGGAAAGTCGTCATCAA
GAGCGCCGATATGTTCGGGGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCTTTTGAGAAGTATGCCGTCGAGAAGGACGTCGCGGAGCAGATAAAGAGGGAGT
TCGATAAGAGGCATGGCCCCACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCA
GTTTTACTTTTCAAATCTGGT
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAGACGCCAAGAGAACCAATCCTGCATCTCTAATGGTGAAACCCGAATCTGAGGATCGCAAACCCTCCTCCGCGCCACCCCTCGCCCGGAAAGTCGTCATCAA
GAGCGCCGATATGTTCGGGGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCTTTTGAGAAGTATGCCGTCGAGAAGGACGTCGCGGAGCAGATAAAGAGGGAGT
TCGATAAGAGGCATGGCCCCACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCA
GTTTTACTTTTCAAATCTGGT
Protein sequenceShow/hide protein sequence
MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKYAVEKDVAEQIKREFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG