; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014680 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014680
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLSD1 zinc finger family protein
Genome locationscaffold1315:210551..212911
RNA-Seq ExpressionMS014680
SyntenyMS014680
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]5.0e-4376.79Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        Q++++CSGCKNLLIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGA SVQCSCCRT+N+AS+ANQ A INC NCR+LLMYQC AHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CTLCNFVT VG
Subjt:  RCTLCNFVTLVG

XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]2.3e-4376.79Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGATSVQCSCCRT+N+ASKANQ A  NC NCR+LLMYQC AHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CTLCNFVT VG
Subjt:  RCTLCNFVTLVG

XP_022145337.1 protein LSD1-like [Momordica charantia]1.5e-5598.21Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QSRMVCSGCKNLLIYPVGATSICCTLCH+VSPVPTP GLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        RCTLCNFVTLVG
Subjt:  RCTLCNFVTLVG

XP_031738784.1 protein LSD1 [Cucumis sativus]5.0e-4376.79Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        Q++++CSGCKNLLIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGA SVQCSCCRT+N+AS+ANQ A INC NCR+LLMYQC AHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CTLCNFVT VG
Subjt:  RCTLCNFVTLVG

XP_038903355.1 protein LSD1-like [Benincasa hispida]6.6e-4378.57Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        ++ +VCSGCK LLIYP GAT ICC LCHTVSPVPT +GL MARLVC GCHTLL++SRGATSVQCSCCRTVN+AS+ANQ A INC NCR++LMYQ GAHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CTLCNFVT VG
Subjt:  RCTLCNFVTLVG

TrEMBL top hitse value%identityAlignment
A0A1S3BJQ2 protein LSD1 isoform X26.6e-4168.8Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASK-------------ANQTAEINCRNC
        Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGATSVQCSCCRT+N+ASK             ANQ A  NC NC
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASK-------------ANQTAEINCRNC

Query:  RMLLMYQCGAHSVRCTLCNFVTLVG
        R+LLMYQC AHSV+CTLCNFVT VG
Subjt:  RMLLMYQCGAHSVRCTLCNFVTLVG

A0A1S3BKC0 protein LOL1 isoform X11.1e-4376.79Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        Q++++CSGCKN+LIYP GATSICC LCH V+PVPT +GL MARLVC GC+TLL++SRGATSVQCSCCRT+N+ASKANQ A  NC NCR+LLMYQC AHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CTLCNFVT VG
Subjt:  RCTLCNFVTLVG

A0A4Y7KPP1 Uncharacterized protein2.5e-4071.43Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+PVP P G EMA+LVC GCHTLL++ RGATSVQCSCC T+N A +ANQ A +NC NCRMLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +CT+CNFVT VG
Subjt:  RCTLCNFVTLVG

A0A6J1CWA3 protein LSD1-like7.3e-5698.21Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QSRMVCSGCKNLLIYPVGATSICCTLCH+VSPVPTP GLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        RCTLCNFVTLVG
Subjt:  RCTLCNFVTLVG

A0A6P6TW30 protein LOL1 isoform X11.5e-4069.64Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP PAG EMA+LVC GCHTLL++ RGATSVQCSCC T+N A +ANQ A +NC NCRMLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT +G
Subjt:  RCTLCNFVTLVG

SwissProt top hitse value%identityAlignment
P94077 Protein LSD13.4e-2647.11Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML
        Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA+SV+CSCC+T N         + + ++Q A+INC +CR  
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML

Query:  LMYQCGAHSVRCTLCNFVTLV
        LMY  GA SV+C +C FVT V
Subjt:  LMYQCGAHSVRCTLCNFVTLV

Q0J7V9 Protein LSD12.9e-4170.54Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YP GATS+CC +C TV+ VP P G EMA+LVC GCHTLL++ RGATSVQCSCC TVN A +ANQ A +NC NCRMLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT VG
Subjt:  RCTLCNFVTLVG

Q2QMB3 Protein LOL23.9e-3050.89Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VC GC+N+L+YP GA S+CC +CH VS      G+++A L+C GC TLL+++R ATSV+CSCC TVN     +  A +NC  C+ +LMY  GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNF+T  G
Subjt:  RCTLCNFVTLVG

Q6ASS2 Protein LOL38.1e-2849.56Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAG-LEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHS
        QS++VC GC+++L YP GA S+CC LC  ++ VP PA  +EMA L+C GC TLL+++R A +V+CSCC TVN     N  A ++C  CR  LMY  GA S
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAG-LEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHS

Query:  VRCTLCNFVTLVG
        V+C +C+++T  G
Subjt:  VRCTLCNFVTLVG

Q93ZB1 Protein LOL11.9e-4069.64Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGATSVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT VG
Subjt:  RCTLCNFVTLVG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.3e-4169.64Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGATSVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT VG
Subjt:  RCTLCNFVTLVG

AT1G32540.2 lsd one like 11.3e-4169.64Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGATSVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT VG
Subjt:  RCTLCNFVTLVG

AT1G32540.3 lsd one like 11.3e-4169.64Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV
        QS++VCSGC+NLL+YPVGATS+CC +C+ V+ VP P G EMA+LVC GCHTLL++ RGATSVQCSCC TVN A +ANQ A +NC NC MLLMYQ GA SV
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSV

Query:  RCTLCNFVTLVG
        +C +CNFVT VG
Subjt:  RCTLCNFVTLVG

AT4G20380.1 LSD1 zinc finger family protein2.4e-2747.11Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML
        Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA+SV+CSCC+T N         + + ++Q A+INC +CR  
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML

Query:  LMYQCGAHSVRCTLCNFVTLV
        LMY  GA SV+C +C FVT V
Subjt:  LMYQCGAHSVRCTLCNFVTLV

AT4G20380.2 LSD1 zinc finger family protein2.4e-2747.11Show/hide
Query:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML
        Q ++VC GC+NLL+YP GA+++ C LC+T++ V P P   +MA ++C GC T+L+++RGA+SV+CSCC+T N         + + ++Q A+INC +CR  
Subjt:  QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPV-PTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVN---------SASKANQTAEINCRNCRML

Query:  LMYQCGAHSVRCTLCNFVTLV
        LMY  GA SV+C +C FVT V
Subjt:  LMYQCGAHSVRCTLCNFVTLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGC
AGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCT
CCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTA
GTTGGT
mRNA sequenceShow/hide mRNA sequence
CAAAGCCGAATGGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCAGTTGGAGCAACCTCCATTTGCTGTACTCTTTGCCATACGGTCTCCCCTGTGCCAACTCCTGC
AGGGTTAGAGATGGCTCGGCTGGTGTGTAAAGGCTGTCACACTCTGCTCTTGTTCAGTCGCGGGGCGACAAGTGTACAATGTTCGTGTTGTCGAACGGTCAATTCAGCCT
CCAAAGCAAATCAGACGGCTGAGATCAACTGTAGGAACTGTAGGATGCTGCTGATGTACCAATGTGGGGCCCACTCTGTGAGATGTACACTTTGTAATTTTGTGACCTTA
GTTGGT
Protein sequenceShow/hide protein sequence
QSRMVCSGCKNLLIYPVGATSICCTLCHTVSPVPTPAGLEMARLVCKGCHTLLLFSRGATSVQCSCCRTVNSASKANQTAEINCRNCRMLLMYQCGAHSVRCTLCNFVTL
VG