; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014807 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014807
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
Genome locationscaffold493:388058..388259
RNA-Seq ExpressionMS014807
SyntenyMS014807
Gene Ontology termsGO:0045943 - positive regulation of transcription by RNA polymerase I (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033967.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo var. makuwa]1.0e-1985.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
TYK02577.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo var. makuwa]1.0e-1985.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
XP_008463416.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Cucumis melo]1.0e-1985.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
XP_022151017.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [Momordica charantia]1.0e-1985.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD RAIG TQP RVAAVTVAKRVAEE G+E+GQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
XP_038904721.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1 [Benincasa hispida]1.0e-1985.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
TrEMBL top hitse value%identityAlignment
A0A0A0L7N3 Uncharacterized protein4.9e-2085.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
A0A1S3CJ82 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH104.9e-2085.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
A0A5A7SXH3 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH104.9e-2085.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
A0A5D3BSZ3 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH104.9e-2085.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD +AIG TQP RVAAVTVAKRVAEE G+EVGQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
A0A6J1DA28 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH104.9e-2085.51Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        FLFNAGF RD RAIG TQP RVAAVTVAKRVAEE G+E+GQKVGYSIRFED   SSTRIKYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
SwissProt top hitse value%identityAlignment
F4IE66 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH102.0e-1871.01Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS---STRIKYMTDGLLLR
        FL+NAGF R+ + IG TQP R+AAVTVAKRVAEE  +++GQKVGYSIRF+D+   STR+KYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS---STRIKYMTDGLLLR
O42643 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp222.5e-1359.42Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
        +L   G+  D + IG TQP RVAA++VAKRVAEE G  VG++VGY+IRFED +   T+IKYMTDG+L R
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx159.5e-1356.52Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
        F+ +AG  R  + +G TQP RVAA++VAKRV+EE   E+G++VGYSIRFE+ S   T +KY+TDG+LLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
Q5RBD4 Probable ATP-dependent RNA helicase DHX359.5e-1357.14Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS----STRIKYMTDGLLLR
        +L  AG+  + R +G TQP RVAAVTVA RVAEERG  +G +VGY IRF+D     +TRIK++TDG+L+R
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS----STRIKYMTDGLLLR
Q9H5Z1 Probable ATP-dependent RNA helicase DHX359.5e-1357.14Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS----STRIKYMTDGLLLR
        +L  AG+  + R +G TQP RVAAVTVA RVAEERG  +G +VGY IRF+D     +TRIK++TDG+L+R
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS----STRIKYMTDGLLLR
Arabidopsis top hitse value%identityAlignment
AT1G26370.1 RNA helicase family protein1.4e-1971.01Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS---STRIKYMTDGLLLR
        FL+NAGF R+ + IG TQP R+AAVTVAKRVAEE  +++GQKVGYSIRF+D+   STR+KYMTDGLLLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDS---STRIKYMTDGLLLR
AT1G32490.1 RNA helicase family protein3.4e-1357.97Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        +L  AG Y  R  +G TQP RVAA++VA RVA+E G+++G +VGYSIRFED     T +KYMTDG+LLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
AT1G32490.2 RNA helicase family protein3.4e-1357.97Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        +L  AG Y  R  +G TQP RVAA++VA RVA+E G+++G +VGYSIRFED     T +KYMTDG+LLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
AT3G26560.1 ATP-dependent RNA helicase, putative3.4e-1360.87Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
        +L  AG Y  +  IG TQP RVAA++VAKRVAEE G  +G++VGY+IRFED +   T IKYMTDG+LLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSS---TRIKYMTDGLLLR
AT4G16680.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.4e-1360.87Show/hide
Query:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR
        +L  AG Y  R  IG TQP RVAA++VA RVA+E G+++G +VGYSIRFED     T IKYMTDG+LLR
Subjt:  FLFNAGFYRDRRAIGATQP-RVAAVTVAKRVAEERGIEVGQKVGYSIRFED---SSTRIKYMTDGLLLR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCTATTTAATGCTGGATTTTATAGAGATAGGAGAGCTATTGGGGCGACCCAACCTCGTGTTGCTGCTGTAACTGTAGCCAAAAGAGTTGCTGAGGAACGTGGCATCGA
GGTGGGCCAAAAGGTTGGGTATTCTATCAGGTTCGAGGATAGTTCCACAAGAATCAAGTACATGACCGATGGTCTACTCCTAAGG
mRNA sequenceShow/hide mRNA sequence
TTCCTATTTAATGCTGGATTTTATAGAGATAGGAGAGCTATTGGGGCGACCCAACCTCGTGTTGCTGCTGTAACTGTAGCCAAAAGAGTTGCTGAGGAACGTGGCATCGA
GGTGGGCCAAAAGGTTGGGTATTCTATCAGGTTCGAGGATAGTTCCACAAGAATCAAGTACATGACCGATGGTCTACTCCTAAGG
Protein sequenceShow/hide protein sequence
FLFNAGFYRDRRAIGATQPRVAAVTVAKRVAEERGIEVGQKVGYSIRFEDSSTRIKYMTDGLLLR