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MS014834 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014834
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationscaffold46:4248..4409
RNA-Seq ExpressionMS014834
SyntenyMS014834
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ IF G++P+SW FR ++YF IH  +DSEK+ VAVISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
KAA0056478.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]2.2e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        +KFKKVE+ +F G +PNSW FR E+YF IHK +DSEKM+V+ ISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
KAA0058383.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]4.9e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+S+F G +P+SW FR E+YF IHK T+SEKM+V+ ISF G  L WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ IF G++P+SW FR ++YF IH  +DSEK+ VAVISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ IF G++P+SW FR ++YF IH  +DSEK+ VAVISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
TrEMBL top hitse value%identityAlignment
A0A5A7U2S1 Ty3/gypsy retrotransposon protein3.1e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ IF G++P+SW FR ++YF IH  +DSEK+ VAVISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
A0A5A7UGM8 Transposon Tf2-1 polyprotein isoform X13.1e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ +F G +PN+W FR ++YF IH+ TDSEKM VA ISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
A0A5A7UN05 Transposon Tf2-1 polyprotein isoform X11.1e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        +KFKKVE+ +F G +PNSW FR E+YF IHK +DSEKM+V+ ISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
A0A5D3CXB1 Ty3/gypsy retrotransposon protein3.1e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+ IF G++P+SW FR ++YF IH  +DSEK+ VAVISF G AL WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
A0A5D3DTK7 Transposon Tf2-1 polyprotein isoform X12.4e-1264.81Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
        SKFKKVE+S+F G +P+SW FR E+YF IHK T+SEKM+V+ ISF G  L WYR
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67020.1 unknown protein3.3e-0632.08Show/hide
Query:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWY
        S  +++E+ +F G     WF +VE++F + ++ DS+K+ +  +S  G+AL W+
Subjt:  SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTAAATTCAAAAAGGTTGAGGTGTCGATTTTTATAGGAGTCAACCCAAACTCGTGGTTTTTCAGAGTGGAGCAGTACTTTGATATCCATAAGTTTACGGACTCGGAGAA
GATGGTCGTGGCGGTGATCAGCTTCAGCGGAATTGCGCTCGCGTGGTATCGA
mRNA sequenceShow/hide mRNA sequence
AGTAAATTCAAAAAGGTTGAGGTGTCGATTTTTATAGGAGTCAACCCAAACTCGTGGTTTTTCAGAGTGGAGCAGTACTTTGATATCCATAAGTTTACGGACTCGGAGAA
GATGGTCGTGGCGGTGATCAGCTTCAGCGGAATTGCGCTCGCGTGGTATCGA
Protein sequenceShow/hide protein sequence
SKFKKVEVSIFIGVNPNSWFFRVEQYFDIHKFTDSEKMVVAVISFSGIALAWYR