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MS014835 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014835
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Tf2-9 polyprotein
Genome locationscaffold46:4495..4788
RNA-Seq ExpressionMS014835
SyntenyMS014835
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW50870.1 Pentatricopeptide repeat-containing protein [Vitis vinifera]9.3e-0945.88Show/hide
Query:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS
        + L+++Q+  VA +R  FE LATPL+ ILEEV++S F+NGL   +RAE+   +  GL  +M  AQ +ED NLA+  + E N  KS
Subjt:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS

RVX19672.1 hypothetical protein CK203_005212 [Vitis vinifera]2.4e-0944.71Show/hide
Query:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS
        + L+++Q+  VA +R  FE LATPL+ I E+V++S F+NGL   +RAE+   +P GL  +M  AQ +ED NLA+  + E N  KS
Subjt:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS

XP_022131713.1 uncharacterized protein LOC111004816 [Momordica charantia]6.9e-1247.62Show/hide
Query:  LSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSE-----------SKPAT
        ++IKQE  V E++E FEAL+     ++EEVL+S +LNGL  ++RAEVLASKP GLD+IMR+AQLIED      E+ E NQ +               P T
Subjt:  LSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSE-----------SKPAT

Query:  MATRT
         ATR+
Subjt:  MATRT

XP_022148929.1 uncharacterized protein LOC111017476 [Momordica charantia]8.7e-1558.75Show/hide
Query:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSE
        +RLL+IKQE  VAE++E FEAL+ PL Q+ +EVL+  FLNGL LVVR++VLA++P+GL++IM +AQL+ED   AV E+ E
Subjt:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSE

XP_022897442.1 uncharacterized protein LOC111411108 [Olea europaea var. sylvestris]9.3e-0943.01Show/hide
Query:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSESKPATM
        ++ LS++Q + V E+R  FE LA+PL  I EEV++ +FLNGL   +RAEV   +P GL++IM  AQ++ED NL       ++QG   +KP ++
Subjt:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSESKPATM

TrEMBL top hitse value%identityAlignment
A0A438ET29 Pentatricopeptide repeat-containing protein4.5e-0945.88Show/hide
Query:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS
        + L+++Q+  VA +R  FE LATPL+ ILEEV++S F+NGL   +RAE+   +  GL  +M  AQ +ED NLA+  + E N  KS
Subjt:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS

A0A438KEQ5 Retrotrans_gag domain-containing protein1.2e-0944.71Show/hide
Query:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS
        + L+++Q+  VA +R  FE LATPL+ I E+V++S F+NGL   +RAE+   +P GL  +M  AQ +ED NLA+  + E N  KS
Subjt:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKS

A0A6J1BU87 uncharacterized protein LOC1110048163.3e-1247.62Show/hide
Query:  LSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSE-----------SKPAT
        ++IKQE  V E++E FEAL+     ++EEVL+S +LNGL  ++RAEVLASKP GLD+IMR+AQLIED      E+ E NQ +               P T
Subjt:  LSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSE-----------SKPAT

Query:  MATRT
         ATR+
Subjt:  MATRT

A0A6J1D5H9 uncharacterized protein LOC1110174764.2e-1558.75Show/hide
Query:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSE
        +RLL+IKQE  VAE++E FEAL+ PL Q+ +EVL+  FLNGL LVVR++VLA++P+GL++IM +AQL+ED   AV E+ E
Subjt:  SRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSE

W9RUR8 Retrotrans_gag domain-containing protein7.7e-0944.05Show/hide
Query:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGK
        RL++++Q+S V EFR+WFEAL  P+R I E + + AFLNGL   VR EV   +P  L + M  AQ IE+ N A+    +   G+
Subjt:  RLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding3.3e-0436.67Show/hide
Query:  IKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTN-LAVLESSESNQGKSESKPATMA
        I+QE  V E+RE FEAL      +  + L++ FL GL   ++  V   KP G+ ++M  AQ +E++N L V  S  S Q + +  P T A
Subjt:  IKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTN-LAVLESSESNQGKSESKPATMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTCACGCCTTTTGTCCATTAAACAGGAAAGCATCGTTGCGGAGTTTAGGGAATGGTTTGAAGCACTGGCGACACCCTTACGGCAGATTTTGGAGGAGGTGTTGAAGAG
TGCATTCCTAAATGGGCTGTACCTAGTTGTACGAGCAGAAGTGTTGGCTTCGAAACCTGAGGGATTGGACAAAATCATGCGAAAGGCACAATTGATTGAGGATACTAACC
TAGCAGTCCTAGAATCAAGTGAATCGAACCAAGGTAAGAGTGAAAGCAAACCGGCAACAATGGCGACAAGGACT
mRNA sequenceShow/hide mRNA sequence
GTGTCACGCCTTTTGTCCATTAAACAGGAAAGCATCGTTGCGGAGTTTAGGGAATGGTTTGAAGCACTGGCGACACCCTTACGGCAGATTTTGGAGGAGGTGTTGAAGAG
TGCATTCCTAAATGGGCTGTACCTAGTTGTACGAGCAGAAGTGTTGGCTTCGAAACCTGAGGGATTGGACAAAATCATGCGAAAGGCACAATTGATTGAGGATACTAACC
TAGCAGTCCTAGAATCAAGTGAATCGAACCAAGGTAAGAGTGAAAGCAAACCGGCAACAATGGCGACAAGGACT
Protein sequenceShow/hide protein sequence
VSRLLSIKQESIVAEFREWFEALATPLRQILEEVLKSAFLNGLYLVVRAEVLASKPEGLDKIMRKAQLIEDTNLAVLESSESNQGKSESKPATMATRT