CuGenDBv2

Gene ID	MS014837
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold46:32277..32407
RNA-Seq Expression	MS014837
Synteny	MS014837
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABW34759.1 photosystem II 44 kDa protein, partial [Astrocaryum alatum]

2.2e-10

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG  CFS    SSLFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG

ABW34760.1 photosystem II 44 kDa protein, partial [Elaeis oleifera]

2.2e-10

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG  CFS    SSLFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG

ABW34761.1 photosystem II 44 kDa protein, partial [Allagoptera arenaria]

2.2e-10

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG  CFS    SSLFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG

AKZ30250.1 photosystem II 44 kDa protein [Goodenia ovata]

1.0e-07

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

YP_009751395.1 photosystem II CP43 chlorophyll apoprotein [Pedicularis oederi]

1.0e-07

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

TrEMBL top hits

e value

%identity

Alignment

A0A0K1HRH1 Photosystem II CP43 reaction center protein

4.9e-08

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

A0A0K1ZVU1 Photosystem II CP43 reaction center protein

4.9e-08

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

A0A0K1ZXA3 Photosystem II CP43 reaction center protein

4.9e-08

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

A0A0K1ZXQ3 Photosystem II CP43 reaction center protein

4.9e-08

65.12

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

A8UGQ2 Photosystem II CP43 reaction center protein (Fragment)

1.0e-10

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG  CFS    SSLFWG
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLG-MCFSDSIQSSLFWG

SwissProt top hits

e value

%identity

Alignment

A1E9Z4 Photosystem II CP43 reaction center protein

3.2e-09

60.47

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +L++G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

A8Y9F6 Photosystem II CP43 reaction center protein

3.2e-09

60.47

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +L++G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

B2XWK1 Photosystem II CP43 reaction center protein

1.9e-09

62.79

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +LF+G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

B3TNB9 Photosystem II CP43 reaction center protein

3.2e-09

60.47

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +L++G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

P11095 Photosystem II CP43 reaction center protein

3.2e-09

60.47

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +L++G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

3.9e-10

60.47

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Query:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG
        EESFPFFGYVW+DRNK+  ILG+HLILLG+     +  +L++G
Subjt:  EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

Sequences

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CDS sequence

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GAAGAATCTTTTCCATTCTTCGGTTACGTGTGGGAAGATAGAAATAAAATAAATGTCATTTTAGGTGTTCACTTAATTTTGTTAGGTATGTGCTTTTCTGATAGCATTCA
AAGTTCTTTATTTTGGGGG

mRNA sequence

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GAAGAATCTTTTCCATTCTTCGGTTACGTGTGGGAAGATAGAAATAAAATAAATGTCATTTTAGGTGTTCACTTAATTTTGTTAGGTATGTGCTTTTCTGATAGCATTCA
AAGTTCTTTATTTTGGGGG

Protein sequence

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EESFPFFGYVWEDRNKINVILGVHLILLGMCFSDSIQSSLFWG

MS014837 (gene) of Bitter gourd (TR) v1 genome