; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014840 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014840
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold46:37339..37533
RNA-Seq ExpressionMS014840
SyntenyMS014840
Gene Ontology termsGO:0048583 - regulation of response to stimulus (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]2.8e-1456.92Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  I K+VK FLWSLA+R+LNT +K+Q+   +  L PS CCLC+K  ETLDHLF+HC    K W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]1.5e-1566.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  I KKVK FLWSLA+R+LN Q KLQRK  N SL PS C LC K AE  DHLF+HC  A KGW
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein3.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein3.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein3.8e-1246.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK   PKK K F+W+L H  +NT ++LQ++  NW+L P+ C +C K  E ++HLFIHCP + + W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
A0A5D3C7R2 DUF21 domain-containing protein1.4e-1456.92Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  I K+VK FLWSLA+R+LNT +K+Q+   +  L PS CCLC+K  ETLDHLF+HC    K W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
A0A5D3E632 Protein FAM91A17.3e-1666.15Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  I KKVK FLWSLA+R+LN Q KLQRK  N SL PS C LC K AE  DHLF+HC  A KGW
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.5e-0533.85Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  +P++VK FLW + ++A+ T+E+  R+ L+ S   + C +C  G E++ H+   CP     W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein4.9e-0429.23Show/hide
Query:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW
        WK  +  K+K FLW     AL T  +L+ + ++       CC+     ET+ H+  +CP     W
Subjt:  WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAAGGACCCTATCCCAAAAAAGGTGAAGGTCTTTCTTTGGTCCCTAGCTCATCGTGCATTAAACACCCAGGAGAAGCTTCAAAGAAAGTGTCTGAATTGGTCTCTGCC
CCCCTCAACTTGCTGTCTCTGTTGGAAAGGGGCAGAGACTCTAGATCACTTGTTCATTCACTGTCCCCTTGCTACTAAAGGATGG
mRNA sequenceShow/hide mRNA sequence
TGGAAGGACCCTATCCCAAAAAAGGTGAAGGTCTTTCTTTGGTCCCTAGCTCATCGTGCATTAAACACCCAGGAGAAGCTTCAAAGAAAGTGTCTGAATTGGTCTCTGCC
CCCCTCAACTTGCTGTCTCTGTTGGAAAGGGGCAGAGACTCTAGATCACTTGTTCATTCACTGTCCCCTTGCTACTAAAGGATGG
Protein sequenceShow/hide protein sequence
WKDPIPKKVKVFLWSLAHRALNTQEKLQRKCLNWSLPPSTCCLCWKGAETLDHLFIHCPLATKGW