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MS014841 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014841
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold46:40812..41159
RNA-Seq ExpressionMS014841
SyntenyMS014841
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599033.1 hypothetical protein SDJN03_08811, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3568.64Show/hide
Query:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MNCFSQ  TYTRAIFR T++ F  +TSINGC  N YW SSFH+  LK   LDS+CSRF LRCYSS+K+ KG S S  LD+KP  MEP+ GDFFVVRKGDV
Subjt:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDCQAQVGSSV
        VGVYK+F+DCQAQ+GSS+
Subjt:  VGVYKNFSDCQAQVGSSV

KAG7029985.1 hypothetical protein SDJN02_08329 [Cucurbita argyrosperma subsp. argyrosperma]4.0e-3568.64Show/hide
Query:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MNCFSQ  TYTRAIFR T++ F  +TSINGC  N YW SSFH+  LK   LDS+CSRF LRCYSS+K+ KG S S  LD+KP  MEP+ GDFFVVRKGDV
Subjt:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDCQAQVGSSV
        VGVYK+F+DCQAQ+GSS+
Subjt:  VGVYKNFSDCQAQVGSSV

XP_004143798.1 uncharacterized protein LOC101210930 isoform X1 [Cucumis sativus]6.8e-3568.33Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNCFSQ+ TYTR IFRRT+ VF  +TSI+GCSN YW SSFHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  +E E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDCQAQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

XP_011655308.1 uncharacterized protein LOC101210930 isoform X2 [Cucumis sativus]6.8e-3568.33Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNCFSQ+ TYTR IFRRT+ VF  +TSI+GCSN YW SSFHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  +E E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDCQAQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

XP_023547239.1 uncharacterized protein LOC111806115 [Cucurbita pepo subsp. pepo]1.1e-3568.64Show/hide
Query:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MNCFSQ  TYTRAIFR T++ F  +TSI+GC  NPYW SSFH+  LK   LDS+CSRF LRCYSS+K+ KG S S  LD+KP  MEP+ GDFFVVRKGDV
Subjt:  MNCFSQLFTYTRAIFRRTSV-FLPTTSINGCS-NPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDCQAQVGSSV
        VGVYK+F+DCQAQ+GSS+
Subjt:  VGVYKNFSDCQAQVGSSV

TrEMBL top hitse value%identityAlignment
A0A0A0KTZ9 RNase H domain-containing protein3.3e-3568.33Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNCFSQ+ TYTR IFRRT+ VF  +TSI+GCSN YW SSFHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  +E E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDCQAQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

A0A1S3CPE1 uncharacterized protein LOC103503315 isoform X45.6e-3567.5Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR IFRRT+ VF  +TSI+GCSNPYW S+FHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDC AQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

A0A1S3CPG2 uncharacterized protein LOC103503315 isoform X35.6e-3567.5Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR IFRRT+ VF  +TSI+GCSNPYW S+FHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDC AQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

A0A1S3CQX0 uncharacterized protein LOC103503315 isoform X25.6e-3567.5Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR IFRRT+ VF  +TSI+GCSNPYW S+FHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDC AQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

A0A5A7TCE2 RNase H family protein, putative isoform 25.6e-3567.5Show/hide
Query:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG
        MNC SQ+ TYTR IFRRT+ VF  +TSI+GCSNPYW S+FHN A+K  ALDS+CSRF LRCYS+   +K  K  S S KLD++P  ME E GDFFVVRKG
Subjt:  MNCFSQLFTYTRAIFRRTS-VFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSS---QKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKG

Query:  DVVGVYKNFSDCQAQVGSSV
        DVVGVYK+FSDC AQ+GSS+
Subjt:  DVVGVYKNFSDCQAQVGSSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein6.6e-1240.17Show/hide
Query:  MNCFSQLFTYTRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV
        MNC S   +Y      + S ++ +   N C   ++  S   + LK  A+ SV     +  YSS+ K  K    S    T  S+++ EK  FFVVRKGDV+
Subjt:  MNCFSQLFTYTRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVV

Query:  GVYKNFSDCQAQVGSSV
        G+YK+ SDCQAQVGSSV
Subjt:  GVYKNFSDCQAQVGSSV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.9e-0861.11Show/hide
Query:  SSMEPEKGDFFVVRKGDVVGVYKNFSDCQAQVGSSV
        S+ME EK  F++VRKGD++GVY++ S+CQ Q GSSV
Subjt:  SSMEPEKGDFFVVRKGDVVGVYKNFSDCQAQVGSSV

AT5G51080.1 RNase H family protein8.7e-1240.68Show/hide
Query:  MNCFSQLFTY-TRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MN FS+  +Y +  +FR++S        N C     +SS   A++ V++         + CYSS+ K AK  S   K     S  + EK  FFVVRKGD+
Subjt:  MNCFSQLFTY-TRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDCQAQVGSSV
        VG+YK+  DCQAQVGSSV
Subjt:  VGVYKNFSDCQAQVGSSV

AT5G51080.2 RNase H family protein8.7e-1240.68Show/hide
Query:  MNCFSQLFTY-TRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV
        MN FS+  +Y +  +FR++S        N C     +SS   A++ V++         + CYSS+ K AK  S   K     S  + EK  FFVVRKGD+
Subjt:  MNCFSQLFTY-TRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQ-KIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDV

Query:  VGVYKNFSDCQAQVGSSV
        VG+YK+  DCQAQVGSSV
Subjt:  VGVYKNFSDCQAQVGSSV

AT5G51080.3 RNase H family protein3.4e-0861.9Show/hide
Query:  KLDTKPSSMEPEKGDFFVVRKGDVVGVYKNFSDCQAQVGSSV
        K     S  + EK  FFVVRKGD+VG+YK+  DCQAQVGSSV
Subjt:  KLDTKPSSMEPEKGDFFVVRKGDVVGVYKNFSDCQAQVGSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGCTTCTCGCAACTGTTTACCTATACTCGCGCCATTTTTAGAAGAACCAGCGTTTTTCTGCCTACGACCTCCATTAATGGCTGCTCCAATCCCTACTGGAGGTC
AAGTTTTCACAATGCCGCTCTTAAGGTTGCTGCTTTAGATTCTGTGTGCTCCAGATTCCATCTGCGCTGCTATTCGTCCCAAAAAATCGCCAAGGGCAATTCTTGTTCGC
GGAAGTTAGATACTAAACCTTCTTCCATGGAACCGGAGAAGGGCGACTTCTTTGTTGTACGGAAGGGGGATGTTGTTGGAGTCTATAAAAATTTTAGTGACTGTCAGGCT
CAAGTTGGATCTTCGGTA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGCTTCTCGCAACTGTTTACCTATACTCGCGCCATTTTTAGAAGAACCAGCGTTTTTCTGCCTACGACCTCCATTAATGGCTGCTCCAATCCCTACTGGAGGTC
AAGTTTTCACAATGCCGCTCTTAAGGTTGCTGCTTTAGATTCTGTGTGCTCCAGATTCCATCTGCGCTGCTATTCGTCCCAAAAAATCGCCAAGGGCAATTCTTGTTCGC
GGAAGTTAGATACTAAACCTTCTTCCATGGAACCGGAGAAGGGCGACTTCTTTGTTGTACGGAAGGGGGATGTTGTTGGAGTCTATAAAAATTTTAGTGACTGTCAGGCT
CAAGTTGGATCTTCGGTA
Protein sequenceShow/hide protein sequence
MNCFSQLFTYTRAIFRRTSVFLPTTSINGCSNPYWRSSFHNAALKVAALDSVCSRFHLRCYSSQKIAKGNSCSRKLDTKPSSMEPEKGDFFVVRKGDVVGVYKNFSDCQA
QVGSSV