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MS014849 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014849
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex exonuclease RRP44 homolog A-like
Genome locationscaffold46:258093..259274
RNA-Seq ExpressionMS014849
SyntenyMS014849
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0000175 - 3'-5'-exoribonuclease activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135948.1 exosome complex exonuclease RRP44 homolog A [Momordica charantia]3.7e-5195.41Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLSVVL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        IEEGIYAET
Subjt:  IEEGIYAET

XP_022143443.1 exosome complex exonuclease RRP44 homolog A-like [Momordica charantia]7.5e-5298.17Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLSVVL EIKNKNLSIYNRVRALCSNPLRRFFVFSN+HHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        IEEGIYAET
Subjt:  IEEGIYAET

XP_022952404.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata]5.1e-4888.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLS+VL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVA QWYQ H+GGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        +EEGI AET
Subjt:  IEEGIYAET

XP_022972336.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]5.1e-4888.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLS+VL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVA QWYQ H+GGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        +EEGI AET
Subjt:  IEEGIYAET

XP_023554295.1 exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo]5.1e-4888.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLS+VL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVA QWYQ H+GGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        +EEGI AET
Subjt:  IEEGIYAET

TrEMBL top hitse value%identityAlignment
A0A5A7SKL0 Exosome complex exonuclease RRP44-like protein A1.6e-4788.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLSVVL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTY+K+MSGESKNDRNDRAIRVA  WYQ HLGGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        IEEGI AET
Subjt:  IEEGIYAET

A0A6J1C6A0 exosome complex exonuclease RRP44 homolog A1.8e-5195.41Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLSVVL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        IEEGIYAET
Subjt:  IEEGIYAET

A0A6J1CQQ6 exosome complex exonuclease RRP44 homolog A-like3.7e-5298.17Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLSVVL EIKNKNLSIYNRVRALCSNPLRRFFVFSN+HHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        IEEGIYAET
Subjt:  IEEGIYAET

A0A6J1GLL6 exosome complex exonuclease RRP44 homolog A-like2.4e-4888.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLS+VL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVA QWYQ H+GGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        +EEGI AET
Subjt:  IEEGIYAET

A0A6J1I5P7 exosome complex exonuclease RRP44 homolog A-like2.4e-4888.07Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LENPAIDDVVMLS+VL E+KNKNLS+YNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVA QWYQ H+GGATRVL++ NDREN+RKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
        +EEGI AET
Subjt:  IEEGIYAET

SwissProt top hitse value%identityAlignment
P37202 Exosome complex exonuclease dis35.1e-1944.66Show/hide
Query:  DVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEEGIY
        DV++L  V  EI +K++ +YNR++ LC    +RF  FSNE   DT+V+ +  ES NDRNDRAIR A  W+  HL     +++++ +DREN R A E+GI 
Subjt:  DVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEEGIY

Query:  AET
          T
Subjt:  AET

Q08162 Exosome complex exonuclease DIS34.1e-1644.86Show/hide
Query:  LENP-AIDDVVMLSVVLYEIKNKNLSIYNRVRALC--SNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGG-ATRVLVVINDREN
        LENP    DV++  +VL E++NK+  +Y R+R LC  S+  +RF VF NE  + T+V+ +  E+ NDRNDRAIR   QWY +HL      V++V NDR N
Subjt:  LENP-AIDDVVMLSVVLYEIKNKNLSIYNRVRALC--SNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGG-ATRVLVVINDREN

Query:  KRKAIEE
        +  A +E
Subjt:  KRKAIEE

Q9CSH3 Exosome complex exonuclease RRP444.3e-2647.37Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHL-----GGATRVLVVINDRE
        LE+PAI +V++L  V+ E++N++  IY R+R + +N  + F+ F+NEHHK+TY+++  GE+ NDRNDRAIRVA +WY +HL         +V+++ NDR+
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHL-----GGATRVLVVINDRE

Query:  NKRKAIEEGIYAET
        NK KA++EGI A T
Subjt:  NKRKAIEEGIYAET

Q9SHL7 Exosome complex exonuclease RRP44 homolog A2.2e-3872.48Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVL E+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  ES ND NDRAIRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET

Q9Y2L1 Exosome complex exonuclease RRP444.3e-2649.12Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHL-----GGATRVLVVINDRE
        LE+PAI +V++L  VL E++N++  +Y R+R + +N  + F+ F+NEHH++TYV++  GE+ NDRNDRAIRVA +WY +HL         +V+ + NDR 
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHL-----GGATRVLVVINDRE

Query:  NKRKAIEEGIYAET
        NK KAIEEGI A T
Subjt:  NKRKAIEEGIYAET

Arabidopsis top hitse value%identityAlignment
AT2G17510.1 ribonuclease II family protein1.6e-3972.48Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVL E+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  ES ND NDRAIRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET

AT2G17510.2 ribonuclease II family protein1.6e-3972.48Show/hide
Query:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA
        LEN AID VV+LSVVL E+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  ES ND NDRAIRVAT WYQKHLG  ++VL+V NDRENKRKA
Subjt:  LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKA

Query:  IEEGIYAET
         EEGI AET
Subjt:  IEEGIYAET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGTACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCC
ACTGAGGAGATTCTTTGTCTTCTCCAACGAGCATCACAAGGATACATATGTTAAGGAGATGAGTGGAGAAAGTAAAAATGATCGAAATGATAGAGCAATTCGTGTGGCTA
CTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACA
mRNA sequenceShow/hide mRNA sequence
CTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGTACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCC
ACTGAGGAGATTCTTTGTCTTCTCCAACGAGCATCACAAGGATACATATGTTAAGGAGATGAGTGGAGAAAGTAAAAATGATCGAAATGATAGAGCAATTCGTGTGGCTA
CTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACA
Protein sequenceShow/hide protein sequence
LENPAIDDVVMLSVVLYEIKNKNLSIYNRVRALCSNPLRRFFVFSNEHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET