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MS014869 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014869
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold977:34890..35048
RNA-Seq ExpressionMS014869
SyntenyMS014869
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-0665.71Show/hide
Query:  KLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDC
        KLG M  EKWIPV+YEKL DFCY CG++GH++++C
Subjt:  KLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDC

KAF7835208.1 cysteine desulfurase mitochondrial-like [Senna tora]3.7e-0453.33Show/hide
Query:  IKLGAMI---DEKWIPV--TYEKLLDFCYACGKLGHMMKDCDSDS
        +K G ++   DE+ + V   YE+LLDFCY CGKLGH +KDC+SD+
Subjt:  IKLGAMI---DEKWIPV--TYEKLLDFCYACGKLGHMMKDCDSDS

OMO60252.1 reverse transcriptase [Corchorus capsularis]2.8e-0453.66Show/hide
Query:  WIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVR
        W  V YEKL DFC++CG+LGHM K C  DS P     N +R
Subjt:  WIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVR

OMP04828.1 Ribosomal protein S21 [Corchorus olitorius]1.3e-0454.76Show/hide
Query:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIH
        D  W+ + YEKL DFC+ACGKLGH MK+CD + S  PR  ++
Subjt:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIH

XP_010666083.1 PREDICTED: uncharacterized protein LOC104883293 [Beta vulgaris subsp. vulgaris]3.7e-0453.19Show/hide
Query:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCD---SDSSPRKKIHNMVR
        D+  IPV YEKL  FCY CG +GH  KDCD    D+SP+KK+   +R
Subjt:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCD---SDSSPRKKIHNMVR

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein5.1e-0770.27Show/hide
Query:  IKLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDCD
        IKLGAM  EK IPVTYEKL DFCY CG LGH++++C+
Subjt:  IKLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDCD

A0A1R3GQA2 Reverse transcriptase1.4e-0453.66Show/hide
Query:  WIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVR
        W  V YEKL DFC++CG+LGHM K C  DS P     N +R
Subjt:  WIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVR

A0A1R3KCS6 Ribosomal protein S216.2e-0554.76Show/hide
Query:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIH
        D  W+ + YEKL DFC+ACGKLGH MK+CD + S  PR  ++
Subjt:  DEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSS--PRKKIH

A0A5C7IUF7 CCHC-type domain-containing protein8.9e-0433.96Show/hide
Query:  IKLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGY
        +KLG   +   + + YE+LL+FC+ACG++GH  K+C  +++ +  ++  V  Y
Subjt:  IKLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGY

A0A5D3C0K2 Reverse transcriptase5.1e-0765.71Show/hide
Query:  KLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDC
        KLG M  EKWIPV+YEKL DFCY CG++GH++++C
Subjt:  KLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAAACTTGGGGCGATGATTGATGAGAAATGGATTCCAGTTACGTACGAGAAACTCCTTGACTTCTGCTATGCGTGTGGAAAACTGGGCCACATGATGAAGGATTGTGA
TTCAGACTCTAGCCCGAGGAAGAAGATCCACAATATGGTCCGTGGCTAT
mRNA sequenceShow/hide mRNA sequence
ATTAAACTTGGGGCGATGATTGATGAGAAATGGATTCCAGTTACGTACGAGAAACTCCTTGACTTCTGCTATGCGTGTGGAAAACTGGGCCACATGATGAAGGATTGTGA
TTCAGACTCTAGCCCGAGGAAGAAGATCCACAATATGGTCCGTGGCTAT
Protein sequenceShow/hide protein sequence
IKLGAMIDEKWIPVTYEKLLDFCYACGKLGHMMKDCDSDSSPRKKIHNMVRGY