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MS014870 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014870
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold977:37429..37668
RNA-Seq ExpressionMS014870
SyntenyMS014870
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019106889.1 PREDICTED: uncharacterized protein LOC109135783 [Beta vulgaris subsp. vulgaris]3.7e-1657.69Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        +AN LK  ++S+IS++QS FVPKRLI+DNA+I FE  H +  K   K G V LKL MSKAYDR+EW++L K+M K GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]1.2e-1765.38Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN LK V+DS+IS +QS FVP R I+DNA+IGFECI+ + NKR  K G V +KL MSKAYDR+EW YLR IM K+GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

XP_030479065.1 uncharacterized protein LOC115696297 [Cannabis sativa]3.7e-1656.41Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN ++ +IDS+IS +QS F+P RLISDN M+ FE +H L  KR  KKG + LKL MSKAYDR+EW +L+ +M+++GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

XP_030487044.1 uncharacterized protein LOC115703959 [Cannabis sativa]2.9e-1658.97Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN LKHV+ ++IS +QS F+P RLI+DN MI FE +H L  KR  K+G + LKL MSKAYDR+EW +L+ IM K+GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

XP_030501136.1 uncharacterized protein LOC115716466 [Cannabis sativa]1.7e-1658.97Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN LKHV+ ++IS +QS F+P+RLI+DN MI FE +H L  KR  K+G + LKL MSKAYDR+EW +L+ IM K+GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

TrEMBL top hitse value%identityAlignment
A0A2N9ESR2 Uncharacterized protein1.8e-1655Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE
        LAN LK V+  +IS +QS FVP RLI+DN +I FE +H+++N+R  K G + LKL MSKAYDR+EW +L+++MT++GF+E
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE

A0A2N9I9F4 Reverse transcriptase domain-containing protein1.8e-1655Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE
        LAN LK V+  +IS +QS FVP RLI+DN +I FE +H+++N+R  K G + LKL MSKAYDR+EW +L+++MT++GF+E
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE

A0A2N9ILQ3 Reverse transcriptase domain-containing protein2.8e-1757.69Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN LK ++D++IS SQS FVP RLI+DN  + FE +H L  K+P+KKG +V+KL MSKAYDR+EW +L ++M K+GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

A0A6J1DUG8 uncharacterized protein LOC1110241355.6e-1865.38Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN LK V+DS+IS +QS FVP R I+DNA+IGFECI+ + NKR  K G V +KL MSKAYDR+EW YLR IM K+GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

A0A803PCK4 Uncharacterized protein8.1e-1758.97Show/hide
Query:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF
        LAN ++ +IDS+IS +QS F+P RLISDN M+ FE +H L  KR  KKG + LKL MSKAYDR+EW +L+ IMT++GF
Subjt:  LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases6.2e-0938.16Show/hide
Query:  LKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE
        LK ++ ++I  +Q+ F+P R+ +DN +   E +H++  K+   KG ++LKL + KAYDRI W YL   +   GF E
Subjt:  LKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGGCTAACATATTAAAACACGTTATTGACTCTATGATTTCTCTATCGCAATCAATTTTTGTCCCGAAAAGACTTATCTCTGATAATGCCATGATAGGATTTGAATGCAT
TCACAATCTAAACAACAAAAGACCAAGGAAAAAGGGGATGGTGGTGTTGAAGCTGTGCATGAGCAAGGCCTATGATCGCATCGAATGGGCATATCTAAGAAAAATTATGA
CCAAGATAGGTTTCTATGAA
mRNA sequenceShow/hide mRNA sequence
CTGGCTAACATATTAAAACACGTTATTGACTCTATGATTTCTCTATCGCAATCAATTTTTGTCCCGAAAAGACTTATCTCTGATAATGCCATGATAGGATTTGAATGCAT
TCACAATCTAAACAACAAAAGACCAAGGAAAAAGGGGATGGTGGTGTTGAAGCTGTGCATGAGCAAGGCCTATGATCGCATCGAATGGGCATATCTAAGAAAAATTATGA
CCAAGATAGGTTTCTATGAA
Protein sequenceShow/hide protein sequence
LANILKHVIDSMISLSQSIFVPKRLISDNAMIGFECIHNLNNKRPRKKGMVVLKLCMSKAYDRIEWAYLRKIMTKIGFYE