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MS014881 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014881
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger CCCH domain-containing protein 40-like
Genome locationscaffold977:162741..162968
RNA-Seq ExpressionMS014881
SyntenyMS014881
Gene Ontology termsGO:0000974 - Prp19 complex (cellular component)
GO:0071006 - U2-type catalytic step 1 spliceosome (cellular component)
GO:0071007 - U2-type catalytic step 2 spliceosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0017070 - U6 snRNA binding (molecular function)
GO:0036002 - pre-mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR039171 - Pre-mRNA-splicing factor Cwc2/Slt11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056116.1 zinc finger CCCH domain-containing protein 40-like [Cucumis melo var. makuwa]3.3e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

KCW52573.1 hypothetical protein EUGRSUZ_J019482, partial [Eucalyptus grandis]3.3e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_022150908.1 zinc finger CCCH domain-containing protein 49 [Momordica charantia]2.1e-3297.3Show/hide
Query:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+VAEQDL+DNFYAHGGIESIRMVLQRACAFLTYTTR
Subjt:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_038890333.1 zinc finger CCCH domain-containing protein 40-like [Benincasa hispida]3.3e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

XP_039159552.1 zinc finger CCCH domain-containing protein 40 [Eucalyptus grandis]3.3e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

TrEMBL top hitse value%identityAlignment
A0A059AFG1 Uncharacterized protein (Fragment)1.6e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A0A0LGN2 Uncharacterized protein1.6e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A1S3BU98 zinc finger CCCH domain-containing protein 40-like1.6e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A5A7UP80 Zinc finger CCCH domain-containing protein 40-like1.6e-3093.15Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+V+EQDL+DNFYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

A0A6J1DAQ4 zinc finger CCCH domain-containing protein 491.0e-3297.3Show/hide
Query:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDA+VAEQDL+DNFYAHGGIESIRMVLQRACAFLTYTTR
Subjt:  RVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

SwissProt top hitse value%identityAlignment
Q5SNN4 Zinc finger CCCH domain-containing protein 405.0e-2982.19Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEMPSL PP+DESIRTLY+GGL+ ++ EQDL+D FYAHG IESIRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

Q6Z358 Zinc finger CCCH domain-containing protein 497.7e-3083.56Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL+KAGEMPSL PP+DESIRTLY+GGLD++V EQDL+D FYAHG IE+IRMVLQRACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

Q9FL40 Zinc finger CCCH domain-containing protein 536.1e-1964.62Show/hide
Query:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ
        +  VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++++ EQD+ D+FYA+G +ESIR++ +
Subjt:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ

Q9LNV5 Zinc finger CCCH domain-containing protein 43.7e-2468.49Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++++ EQD++D FYAHG IESIR++  +ACAF+TYT+R
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

Q9ZW36 Zinc finger CCCH domain-containing protein 251.5e-2573.97Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEM +LE PED+SIRTLYVGGL+++V EQD++D FYAHG IESIR++ ++ACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

Arabidopsis top hitse value%identityAlignment
AT1G07360.1 CCCH-type zinc fingerfamily protein with RNA-binding domain2.6e-2568.49Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVA+KLL KAGEM +LE P+DESI+TLYVGGL++++ EQD++D FYAHG IESIR++  +ACAF+TYT+R
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

AT2G29580.1 CCCH-type zinc fingerfamily protein with RNA-binding domain1.1e-2673.97Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR
        VNDPVALKLL KAGEM +LE PED+SIRTLYVGGL+++V EQD++D FYAHG IESIR++ ++ACAF+TYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR

AT5G04210.1 CCCH-type zinc fingerfamily protein with RNA-binding domain1.6e-1146.75Show/hide
Query:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGL-DAQVAEQDLQDNFYAHGGIESIRMVLQR---ACAFLTYTTR
        + +P  L++L +A     L+PPED+SI+TLY+  L ++ V EQD++D+F  +G IESI +   R    CAFLTYTTR
Subjt:  VNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGL-DAQVAEQDLQDNFYAHGGIESIRMVLQR---ACAFLTYTTR

AT5G07060.1 CCCH-type zinc fingerfamily protein with RNA-binding domain4.3e-2064.62Show/hide
Query:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ
        +  VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++++ EQD+ D+FYA+G +ESIR++ +
Subjt:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ

AT5G07060.2 CCCH-type zinc fingerfamily protein with RNA-binding domain4.3e-2064.62Show/hide
Query:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ
        +  VNDPVA+KLL KAGEM +LEPPEDESI+TLYVGGL++++ EQD+ D+FYA+G +ESIR++ +
Subjt:  FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCTCAGGGTTAATGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAAATGCCTTCTCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGCGG
TCTAGATGCTCAAGTCGCCGAGCAAGATCTTCAGGACAACTTTTATGCTCATGGTGGAATTGAATCCATCAGAATGGTGCTACAGCGAGCATGTGCATTTTTAACCTACA
CCACCAGA
mRNA sequenceShow/hide mRNA sequence
TTCCTCAGGGTTAATGATCCAGTTGCACTGAAGCTTCTTAACAAGGCTGGAGAAATGCCTTCTCTAGAACCTCCAGAGGATGAGAGTATTAGAACCTTGTATGTGGGCGG
TCTAGATGCTCAAGTCGCCGAGCAAGATCTTCAGGACAACTTTTATGCTCATGGTGGAATTGAATCCATCAGAATGGTGCTACAGCGAGCATGTGCATTTTTAACCTACA
CCACCAGA
Protein sequenceShow/hide protein sequence
FLRVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDAQVAEQDLQDNFYAHGGIESIRMVLQRACAFLTYTTR