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MS014884 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014884
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4283 domain-containing protein
Genome locationscaffold977:181434..181814
RNA-Seq ExpressionMS014884
SyntenyMS014884
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039949.1 hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa]1.4e-0932.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + LK++  +  SC     F  DK LL + D  L  L      W   G  ++K EKW+   H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

KAA0040039.1 hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]1.1e-0930.89Show/hide
Query:  KDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWI
        K +   + D++   V++R    DDW+ I E L  ++  +     F  DK L+   ++   KL      W   G  ++K E+W+ K H   + +   GGWI
Subjt:  KDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWI

Query:  KIKNLPLSLWNKENFVAIGEKCG
        K++ +PL  WN E+F+ IG+ CG
Subjt:  KIKNLPLSLWNKENFVAIGEKCG

KAA0041398.1 hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa]1.8e-0932.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + L+ +  +  SC     F  DK LL + D  L KL      W   G  ++K EKW+ + H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

KAA0044557.1 hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa]1.1e-0932.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + L+ +  +  SC     F  DK LL + D  L KL      W   G  ++K EKW+ + H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

TYK05762.1 cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa]1.1e-1134.75Show/hide
Query:  VAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWIKIKNL
        + +D+  I V++R    DDW+ I E LK+++    S   F  DK L+   D     L      W   G  ++K E+WN K H   + +   GGWIK++ +
Subjt:  VAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWIKIKNL

Query:  PLSLWNKENFVAIGEKCG
        PL  WN E+F+ IG+ CG
Subjt:  PLSLWNKENFVAIGEKCG

TrEMBL top hitse value%identityAlignment
A0A5A7TEP0 DUF4283 domain-containing protein8.8e-1032.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + L+ +  +  SC     F  DK LL + D  L KL      W   G  ++K EKW+ + H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

A0A5A7TFK7 DUF4283 domain-containing protein5.2e-1030.89Show/hide
Query:  KDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWI
        K +   + D++   V++R    DDW+ I E L  ++  +     F  DK L+   ++   KL      W   G  ++K E+W+ K H   + +   GGWI
Subjt:  KDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWI

Query:  KIKNLPLSLWNKENFVAIGEKCG
        K++ +PL  WN E+F+ IG+ CG
Subjt:  KIKNLPLSLWNKENFVAIGEKCG

A0A5A7TRS9 DUF4283 domain-containing protein5.2e-1032.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + L+ +  +  SC     F  DK LL + D  L KL      W   G  ++K EKW+ + H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWN-AKHNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

A0A5D3C3G6 Cleavage and polyadenylation specificity factor subunit 15.5e-1234.75Show/hide
Query:  VAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWIKIKNL
        + +D+  I V++R    DDW+ I E LK+++    S   F  DK L+   D     L      W   G  ++K E+WN K H   + +   GGWIK++ +
Subjt:  VAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKM-DDSVLKLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKCNGGWIKIKNL

Query:  PLSLWNKENFVAIGEKCG
        PL  WN E+F+ IG+ CG
Subjt:  PLSLWNKENFVAIGEKCG

A0A5D3DLT1 DUF4283 domain-containing protein6.8e-1032.03Show/hide
Query:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKC
        ++K++    +D++   ++SR C  DDW  I + LK++  +  SC     F  DK LL + D  L  L      W   G  ++K EKW+   H   + +  
Subjt:  LKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSR--SC-SINSFSVDKTLLKMDDSVL-KLEVFLWHWHNFGGMHIKIEKWNAK-HNRMEWMKC

Query:  NGGWIKIKNLPLSLWNKENFVAIGEKCG
         GGW + + +PL +WN   F+ IGE CG
Subjt:  NGGWIKIKNLPLSLWNKENFVAIGEKCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGCTTAAAAAGGATGACAATGGGGTGGCTATGGATTTTCAGTTGATCTTTGTAGTCTCAAGGCTTTGCTCTTTTGATGATTGGAAATCTATTTCAGAGATTTTGAAAAA
TGAAGTTTCAAGGAGTTGTTCGATCAATTCATTTTCAGTAGATAAAACATTGCTTAAAATGGATGATAGCGTTTTGAAGTTGGAGGTTTTTCTTTGGCATTGGCATAACT
TTGGAGGGATGCATATCAAGATCGAAAAATGGAATGCGAAACACAATAGGATGGAGTGGATGAAGTGCAATGGTGGTTGGATCAAAATTAAGAATTTACCTCTCTCTTTA
TGGAATAAGGAAAATTTTGTAGCCATTGGTGAGAAATGTGGAGAG
mRNA sequenceShow/hide mRNA sequence
TGGCTTAAAAAGGATGACAATGGGGTGGCTATGGATTTTCAGTTGATCTTTGTAGTCTCAAGGCTTTGCTCTTTTGATGATTGGAAATCTATTTCAGAGATTTTGAAAAA
TGAAGTTTCAAGGAGTTGTTCGATCAATTCATTTTCAGTAGATAAAACATTGCTTAAAATGGATGATAGCGTTTTGAAGTTGGAGGTTTTTCTTTGGCATTGGCATAACT
TTGGAGGGATGCATATCAAGATCGAAAAATGGAATGCGAAACACAATAGGATGGAGTGGATGAAGTGCAATGGTGGTTGGATCAAAATTAAGAATTTACCTCTCTCTTTA
TGGAATAAGGAAAATTTTGTAGCCATTGGTGAGAAATGTGGAGAG
Protein sequenceShow/hide protein sequence
WLKKDDNGVAMDFQLIFVVSRLCSFDDWKSISEILKNEVSRSCSINSFSVDKTLLKMDDSVLKLEVFLWHWHNFGGMHIKIEKWNAKHNRMEWMKCNGGWIKIKNLPLSL
WNKENFVAIGEKCGE