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MS014979 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014979
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:373291..373461
RNA-Seq ExpressionMS014979
SyntenyMS014979
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7568997.1 Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa]6.8e-1259.65Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P R+R F+WLATH  ++TN ERVRRHL ESA CP C    ES +H+LRDCP    LW
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
RYR08013.1 hypothetical protein Ahy_B05g075542 [Arachis hypogaea]8.9e-1256.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P RI++FLWL TH+ +LTN ERVRRH+S++AACP C    E+++H+LRDC  A   W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
RYR17534.1 hypothetical protein Ahy_B03g062245 [Arachis hypogaea]5.8e-1152.63Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P R++ FLWL THN + TN ER RRHL+   +CP C    ES++H+LRDCP A  +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
XP_016164673.1 uncharacterized protein LOC107607211 [Arachis ipaensis]3.4e-1156.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P RIR FLWL THN +LTN E+ RRHL+    CP C    ES++H+LRDCP A  +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
XP_025664883.1 uncharacterized protein LOC112763420 [Arachis hypogaea]3.4e-1156.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P RIR FLWL THN +LTN E+ RRHL+    CP C    ES++H+LRDCP A  +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
TrEMBL top hitse value%identityAlignment
A0A068F472 RNase H domain-containing protein4.8e-1156.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P R+R FLWL TH  ++TN ER RRH+SE+  CP C    E+ LH+LRDCP A  LW
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
A0A444YJ97 zf-RVT domain-containing protein4.8e-1154.39Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P  IR FLWL  H  +L N ER RRHL+ +A CP C +  E++LH+LRDCP A D+W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
A0A444Z1E5 zf-RVT domain-containing protein4.3e-1256.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P RI++FLWL TH+ +LTN ERVRRH+S++AACP C    E+++H+LRDC  A   W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
A0A444ZTZ6 RNase H domain-containing protein2.8e-1152.63Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P R++ FLWL THN + TN ER RRHL+   +CP C    ES++H+LRDCP A  +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
A0A445C9S8 Uncharacterized protein6.2e-1156.14Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P RIR FLWL +HN +LTN ER +RHL+  A CP C    E++LH+LRDCP A  +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.3e-1050.88Show/hide
Query:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        P R++ FLWL  +  ++T EER RRHLS S  C  C   VES LH+LRDCP    +W
Subjt:  PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
Arabidopsis top hitse value%identityAlignment
AT3G43940.1 unknown protein2.7e-0647.62Show/hide
Query:  LATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCP
        L +H  ++TN ER RRH+ ES  C  C    E+ +H+LRDCP
Subjt:  LATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCP
AT4G29090.1 Ribonuclease H-like superfamily protein5.6e-0436.36Show/hide
Query:  RIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        +I+ FLW    N L        RHLS+ +AC  CP   E+  H+L  C  A   W
Subjt:  RIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-0448.78Show/hide
Query:  LTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW
        +T+EER RRHLS S         VES LH+ RDCP    +W
Subjt:  LTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTAGCAGAATCCGTTTCTTTCTTTGGTTAGCGACTCACAATCGTCTTCTCACAAATGAGGAAAGGGTTCGTCGTCACCTTTCCGAGTCTGCTGCCTGCCCTCATTGCCC
TGATTTAGTGGAGTCCTCGTTGCATATTCTCCGTGACTGCCCCTGTGCTCACGATTTGTGG
mRNA sequenceShow/hide mRNA sequence
CCTAGCAGAATCCGTTTCTTTCTTTGGTTAGCGACTCACAATCGTCTTCTCACAAATGAGGAAAGGGTTCGTCGTCACCTTTCCGAGTCTGCTGCCTGCCCTCATTGCCC
TGATTTAGTGGAGTCCTCGTTGCATATTCTCCGTGACTGCCCCTGTGCTCACGATTTGTGG
Protein sequenceShow/hide protein sequence
PSRIRFFLWLATHNRLLTNEERVRRHLSESAACPHCPDLVESSLHILRDCPCAHDLW