; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014992 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014992
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosystem II core complex proteins psbY, chloroplastic-like
Genome locationscaffold2:416180..416704
RNA-Seq ExpressionMS014992
SyntenyMS014992
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0045454 - cell redox homeostasis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030145 - manganese ion binding (molecular function)
InterPro domainsIPR009388 - Photosystem II PsbY
IPR038760 - Photosystem II PsbY, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151784.1 photosystem II core complex proteins psbY, chloroplastic-like [Momordica charantia]4.1e-8499.43Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQPAL
        MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAV WVLFNILQPAL
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQPAL

Query:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]7.5e-7085.96Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTPISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]9.9e-7085.39Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ
        MAA+MATMAILN KCF+ NRTP+    SKPT PISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]5.8e-7085.39Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTP+SLP+   K+SLAG+AIAGAIFSTLS +DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]5.2e-7186.11Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISL-----PIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI
        MAA+MATMAILN KCF+ N+TP++P  SKPT PISL     P K SLAGTAIAGAIFST SS DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNI
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISL-----PIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEASSDGRGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
TrEMBL top hitse value%identityAlignment
A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like3.1e-6985Show/hide
Query:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI
        MAA+MATMAILN KCF+ +N+TP++   SKPT PISLP     K SLAGTAIAGAIFSTLSS DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNI
Subjt:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A5A7SY80 Photosystem II core complex proteins psbY3.1e-6985Show/hide
Query:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI
        MAA+MATMAILN KCF+ +N+TP++   SKPT PISLP     K SLAGTAIAGAIFSTLSS DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNI
Subjt:  MAASMATMAILNPKCFS-LNRTPIIPSNSKPTTPISLPI----KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNI

Query:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        LQPALNQINRMRTEKAVIVGLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  LQPALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1DE36 photosystem II core complex proteins psbY, chloroplastic-like2.0e-8499.43Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQPAL
        MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAV WVLFNILQPAL
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQPAL

Query:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  NQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like3.7e-7085.96Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ
        MAA+MATMAILN KCF+ NRTP     SKPTTPISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like4.8e-7085.39Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ
        MAA+MATMAILN KCF+ NRTP+    SKPT PISLPI   K+SLAG+AIAGAIFST S +DAAFAAQQIAD+AEGDNRGLALLLPL+PAV WVLFNILQ
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPI---KTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQ

Query:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVI GLGLGGL ASGLV TPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
SwissProt top hitse value%identityAlignment
O49347 Photosystem II core complex proteins psbY, chloroplastic3.0e-4558.64Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVV
        MAA+MAT      KC SLN +P    N   + P ISLP      +  ++  TA+AGA+FS+LS S+ A A QQIA +    A  DNRGLALLLP+VPA+ 
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVV

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
P80470 Photosystem II core complex proteins psbY, chloroplastic2.7e-4660.8Show/hide
Query:  MAASMA-TMAILNPKCFSLNRTPIIPSNSKPTT-PISL-PIKTS-----------LAGTAIAGAIFSTLSSSDAAFAAQQIADIA----EGDNRGLALLL
        MAA+MA TMA+LN KC +LN      ++ KPT+ PISL P+  S           +   AIAGA+F+TL S D AFA QQ+ADIA      DNRGLALLL
Subjt:  MAASMA-TMAILNPKCFSLNRTPIIPSNSKPTT-PISL-PIKTS-----------LAGTAIAGAIFSTLSSSDAAFAAQQIADIA----EGDNRGLALLL

Query:  PLVPAVVWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLAASGLVM-TPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P++PA+ WVLFNILQPALNQIN+MR E KA IVGLGL GLA SGL++ TPEA AA       SD RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLVPAVVWVLFNILQPALNQINRMRTE-KAVIVGLGLGGLAASGLVM-TPEAMAAE----ASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Arabidopsis top hitse value%identityAlignment
AT1G67740.1 photosystem II BY2.1e-4658.64Show/hide
Query:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVV
        MAA+MAT      KC SLN +P    N   + P ISLP      +  ++  TA+AGA+FS+LS S+ A A QQIA +    A  DNRGLALLLP+VPA+ 
Subjt:  MAASMATMAILNPKCFSLNRTPIIPSNSKPTTP-ISLP------IKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADI----AEGDNRGLALLLPLVPAVV

Query:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIVGLGL-GGLAASGLVMTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCATCAATGGCGACCATGGCGATCCTCAACCCCAAATGCTTCTCCCTCAACAGAACCCCCATCATCCCCTCAAACTCAAAACCCACCACACCCATCTCCCTCCC
AATTAAAACTTCCCTCGCCGGAACCGCCATCGCCGGAGCTATCTTCTCGACATTGAGCTCCAGCGACGCCGCCTTCGCCGCCCAACAAATCGCCGACATAGCGGAGGGCG
ACAACCGTGGGCTCGCCCTTTTGCTGCCCCTCGTCCCGGCGGTGGTGTGGGTGCTCTTCAACATTCTTCAGCCGGCGCTTAATCAGATCAACCGGATGCGAACGGAGAAG
GCGGTGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCGGGCTTGGTCATGACGCCGGAAGCTATGGCGGCGGAAGCTTCCAGCGACGGCAGGGGACAACTTCTGCT
GATTGTTGTGGCGCCGGCGATTCTGTGGGTTCTGTACAACATTCTACAGCCGGCGTTGAACCAGCTCAATCGGATGAGATCCGAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCATCAATGGCGACCATGGCGATCCTCAACCCCAAATGCTTCTCCCTCAACAGAACCCCCATCATCCCCTCAAACTCAAAACCCACCACACCCATCTCCCTCCC
AATTAAAACTTCCCTCGCCGGAACCGCCATCGCCGGAGCTATCTTCTCGACATTGAGCTCCAGCGACGCCGCCTTCGCCGCCCAACAAATCGCCGACATAGCGGAGGGCG
ACAACCGTGGGCTCGCCCTTTTGCTGCCCCTCGTCCCGGCGGTGGTGTGGGTGCTCTTCAACATTCTTCAGCCGGCGCTTAATCAGATCAACCGGATGCGAACGGAGAAG
GCGGTGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCGGGCTTGGTCATGACGCCGGAAGCTATGGCGGCGGAAGCTTCCAGCGACGGCAGGGGACAACTTCTGCT
GATTGTTGTGGCGCCGGCGATTCTGTGGGTTCTGTACAACATTCTACAGCCGGCGTTGAACCAGCTCAATCGGATGAGATCCGAA
Protein sequenceShow/hide protein sequence
MAASMATMAILNPKCFSLNRTPIIPSNSKPTTPISLPIKTSLAGTAIAGAIFSTLSSSDAAFAAQQIADIAEGDNRGLALLLPLVPAVVWVLFNILQPALNQINRMRTEK
AVIVGLGLGGLAASGLVMTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE