CuGenDBv2

Gene ID	MS015012
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S21 family protein isoform 1
Genome location	scaffold2:566214..566558
RNA-Seq Expression	MS015012
Synteny	MS015012
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001911 - Ribosomal protein S21

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573697.1 hypothetical protein SDJN03_27584, partial [Cucurbita argyrosperma subsp. sororia]

5.3e-40

84.21

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVRYFTI
        LKAILIKKVR  T+
Subjt:  LKAILIKKVRYFTI

KAG7012773.1 hypothetical protein SDJN02_25526, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-40

86.49

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVRY
        LKAILIKKVRY
Subjt:  LKAILIKKVRY

XP_022151802.1 uncharacterized protein LOC111019699 [Momordica charantia]

6.7e-51

100

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

XP_022945130.1 uncharacterized protein LOC111449463 [Cucurbita moschata]

1.2e-39

86.36

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

XP_022966846.1 uncharacterized protein LOC111466431 [Cucurbita maxima]

4.1e-40

87.27

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DEG8 uncharacterized protein LOC111019699

3.3e-51

100

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

A0A6J1F3V2 uncharacterized protein LOC111441929

9.8e-40

86.36

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSL+RN+SC IR S+HT    + LQ+LH QQQQWRGIRVKVLNGNLERAL FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

A0A6J1G018 uncharacterized protein LOC111449463

5.8e-40

86.36

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKM+SSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

A0A6J1HQF3 uncharacterized protein LOC111466431

2.0e-40

87.27

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSLARN+SC IR SIH T S      LHC QQQWRGIRVKVLNGNLERA+ FLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

A0A6J1J5L6 uncharacterized protein LOC111481507

1.3e-39

86.36

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Query:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
        MNSL+RN+SC IR S+HT    + L++LH QQQQWRGIRVKVLNGNLERAL FLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK
Subjt:  MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARK

Query:  LKAILIKKVR
        LKAILIKKVR
Subjt:  LKAILIKKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G26360.1 Ribosomal protein S21 family protein

1.2e-24

60.36

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Query:  MNSLARNVSCFI-RPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLAR
        MN++A+ V+  + RPS            L+ Q QQ RGIRVKV + +L++AL  LQ+KMQSSG+ERLIK  QTHHIKNSEK+VLARKNLER+I+S D AR
Subjt:  MNSLARNVSCFI-RPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLAR

Query:  KLKAILIKKVR
        KL++ILIKKVR
Subjt:  KLKAILIKKVR

Sequences

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CDS sequence

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ATGAACTCGTTGGCGCGGAACGTATCGTGCTTCATCAGACCTTCGATTCACACCACTGACTCGATACATTTCCTGCAGAACCTTCATTGTCAGCAGCAGCAATGGAGGGG
GATCCGAGTGAAGGTACTGAACGGAAATCTAGAGCGGGCACTGAAATTTTTGCAAAGGAAGATGCAATCGAGCGGAATCGAGCGGCTGATTAAACGTGAGCAGACCCACC
ACATTAAGAATTCCGAGAAACGAGTTTTGGCACGGAAGAATTTGGAGCGTAAAATTCGATCGCAGGACCTAGCTCGCAAGCTCAAAGCCATCCTTATAAAGAAAGTCAGG
TATTTTACAATCTTC

mRNA sequence

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Protein sequence

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MNSLARNVSCFIRPSIHTTDSIHFLQNLHCQQQQWRGIRVKVLNGNLERALKFLQRKMQSSGIERLIKREQTHHIKNSEKRVLARKNLERKIRSQDLARKLKAILIKKVR
YFTIF

MS015012 (gene) of Bitter gourd (TR) v1 genome