; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015018 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015018
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold2:591953..592366
RNA-Seq ExpressionMS015018
SyntenyMS015018
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601543.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5989.93Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE D EN RERRISITQFKSL QSF NGGTE GSASRC+ AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

XP_022151826.1 probable E3 ubiquitin-protein ligase XERICO [Momordica charantia]1.0e-69100Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

XP_022957080.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]1.2e-5989.93Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE D EN RERRISITQFKSL QSF NGGTE GSASRC+ AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

XP_022984317.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]3.3e-6090.65Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE+D EN RERRISITQFKSL QSF NGGTE GSASRCI AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

XP_023523084.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]1.2e-5989.93Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE+D EN RERRISITQFKSL QSF NGGTE GSASRC  AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

TrEMBL top hitse value%identityAlignment
A0A0A0KTI8 RING-type domain-containing protein1.8e-5684.78Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+ VRSVIQMMSASG++  SSSEEEYD EN RERRISITQFK+L QSFNG TE+   SRC+ AECCVCLC
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
         FEADEEVSELSCKHFFHKACLSKWFDNKH TCPLCRS
Subjt:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

A0A5A7SYA9 Putative E3 ubiquitin-protein ligase XERICO5.3e-5684.06Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        MGLSNFPP AEGVLLLPVL+M+TVMSMAFLK+ VRSVIQMMSASG++  SSSEEEYD EN RERRISITQFK+L QSFNG TE+   SRC+ AECCVCLC
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
         FEADEEVSELSCKHFFHKACLSKWFDNKH TCPLCRS
Subjt:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

A0A6J1DFU2 probable E3 ubiquitin-protein ligase XERICO4.9e-70100Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  GFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

A0A6J1GZI7 probable E3 ubiquitin-protein ligase XERICO6.0e-6089.93Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE D EN RERRISITQFKSL QSF NGGTE GSASRC+ AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

A0A6J1J1V9 probable E3 ubiquitin-protein ligase XERICO1.6e-6090.65Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG  +PSSSEEE+D EN RERRISITQFKSL QSF NGGTE GSASRCI AECCVCL
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSF-NGGTEDGSASRCIAAECCVCL

Query:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
Subjt:  CGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

SwissProt top hitse value%identityAlignment
Q93Z92 E3 ubiquitin-protein ligase At4g116803.3e-0751.06Show/hide
Query:  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHIT--CPLCR
        AECC+CLC +E   E+ EL C H FH  C+ KW    HI   CPLC+
Subjt:  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHIT--CPLCR

Q9LN71 E3 ubiquitin-protein ligase At1g127601.3e-0648.89Show/hide
Query:  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR
        AECC+CL  +E   E+ EL C H FH +C+ KW    + TCPLC+
Subjt:  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO2.7e-1740.54Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---
        MGLS+ P P+EG+L   V+L+NT +S++ +K +VRS + ++  S S S SS S     SEN+         + Q +S  + F   T      S  RC   
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---

Query:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
           EC VCL  F+ D E+++L C H FHK CL KW D  +ITCPLCR+
Subjt:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

Q9XF92 Brassinosteroid-responsive RING protein 13.3e-0728.78Show/hide
Query:  LLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENAR--ERR-----------ISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        + LP L + T+  + F++++V S+ + +  S       +  +Y S   R  E R           + + +F+ L  S     ED      +   C VCL 
Subjt:  LLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENAR--ERR-----------ISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS
         FE ++E+  L +C+H FH++CL +W D+   TCPLCR+
Subjt:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS

Q9ZU51 E3 ubiquitin-protein ligase RHA2B3.9e-0848.94Show/hide
Query:  AAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
        A++C VCL   +  EEV +L C+H FHK CL  W  + +  CPLCRS
Subjt:  AAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein5.6e-2652.94Show/hide
Query:  MNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSEL-SCKHFFHK
        MNTV+S+  LK++VRSV Q++++   +S    +E  D  +   RRISITQFKSL ++     E+         ECCVCLCGF+ +EEVSEL SCKHFFH+
Subjt:  MNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSEL-SCKHFFHK

Query:  ACLSKWFDNKHITCPLCRS
        ACL  WF N H TCPLCRS
Subjt:  ACLSKWFDNKHITCPLCRS

AT1G67856.1 RING/U-box superfamily protein6.9e-3249.64Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        MG+S++P  +EGV  +P+L+MNTV+S++ +K++VRSV+ M+S+  + + +  +++   ++ R RRISIT F+SL ++       GS +   A +CCVCLC
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS
        GF+ +EEVSEL SCKH+FH ACL KWF N H TCPLCRS
Subjt:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS

AT2G04240.1 RING/U-box superfamily protein1.9e-1840.54Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---
        MGLS+ P P+EG+L   V+L+NT +S++ +K +VRS + ++  S S S SS S     SEN+         + Q +S  + F   T      S  RC   
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---

Query:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
           EC VCL  F+ D E+++L C H FHK CL KW D  +ITCPLCR+
Subjt:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

AT2G04240.2 RING/U-box superfamily protein1.9e-1840.54Show/hide
Query:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---
        MGLS+ P P+EG+L   V+L+NT +S++ +K +VRS + ++  S S S SS S     SEN+         + Q +S  + F   T      S  RC   
Subjt:  MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSS-SEEEYDSENARERR---ISITQFKSLRQSFNGGTED---GSASRC---

Query:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS
           EC VCL  F+ D E+++L C H FHK CL KW D  +ITCPLCR+
Subjt:  IAAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS

AT3G61460.1 brassinosteroid-responsive RING-H22.4e-0828.78Show/hide
Query:  LLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENAR--ERR-----------ISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC
        + LP L + T+  + F++++V S+ + +  S       +  +Y S   R  E R           + + +F+ L  S     ED      +   C VCL 
Subjt:  LLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENAR--ERR-----------ISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLC

Query:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS
         FE ++E+  L +C+H FH++CL +W D+   TCPLCR+
Subjt:  GFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTCTCCAATTTTCCGCCTCCGGCTGAAGGAGTGTTGCTATTACCAGTGCTATTGATGAACACAGTAATGTCAATGGCTTTCTTGAAGAGCTTGGTGAGATCTGT
GATACAAATGATGAGTGCGAGTGGCAGTGCGAGCCCTTCGAGTTCTGAGGAAGAATACGATTCAGAAAATGCAAGAGAAAGAAGAATCTCAATAACCCAGTTCAAATCCT
TGCGCCAAAGCTTCAATGGCGGAACAGAGGATGGCTCTGCTTCGAGGTGTATTGCGGCAGAGTGTTGTGTTTGTCTTTGTGGGTTCGAAGCCGACGAGGAAGTTAGTGAG
TTGTCTTGCAAGCACTTTTTCCATAAGGCTTGTCTTTCAAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTCTGTCGCTCC
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTCTCCAATTTTCCGCCTCCGGCTGAAGGAGTGTTGCTATTACCAGTGCTATTGATGAACACAGTAATGTCAATGGCTTTCTTGAAGAGCTTGGTGAGATCTGT
GATACAAATGATGAGTGCGAGTGGCAGTGCGAGCCCTTCGAGTTCTGAGGAAGAATACGATTCAGAAAATGCAAGAGAAAGAAGAATCTCAATAACCCAGTTCAAATCCT
TGCGCCAAAGCTTCAATGGCGGAACAGAGGATGGCTCTGCTTCGAGGTGTATTGCGGCAGAGTGTTGTGTTTGTCTTTGTGGGTTCGAAGCCGACGAGGAAGTTAGTGAG
TTGTCTTGCAAGCACTTTTTCCATAAGGCTTGTCTTTCAAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTCTGTCGCTCC
Protein sequenceShow/hide protein sequence
MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSENARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSE
LSCKHFFHKACLSKWFDNKHITCPLCRS