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MS015029 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015029
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionABC transporter B family member 26 chloroplastic
Genome locationscaffold2:687228..687512
RNA-Seq ExpressionMS015029
SyntenyMS015029
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR003439 - ABC transporter-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135488.1 ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus]2.3e-4495.79Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQED+EWAAKQAFAHDFI SLPNGYQTLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

XP_022151901.1 ABC transporter B family member 26, chloroplastic isoform X1 [Momordica charantia]4.1e-46100Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

XP_022151903.1 ABC transporter B family member 26, chloroplastic isoform X2 [Momordica charantia]4.1e-46100Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

XP_031741316.1 ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis sativus]2.3e-4495.79Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQED+EWAAKQAFAHDFI SLPNGYQTLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

XP_038893200.1 ABC transporter B family member 26, chloroplastic [Benincasa hispida]3.9e-4493.68Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQED+EWAAKQA+AHDFI+SLPNGY+TLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

TrEMBL top hitse value%identityAlignment
A0A0A0KVH9 Uncharacterized protein1.1e-4495.79Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQED+EWAAKQAFAHDFI SLPNGYQTLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

A0A1S3BEE3 ABC transporter B family member 26, chloroplastic isoform X21.9e-4493.68Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQE++EWAAKQA+AHDFI+SLPNGYQTLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

A0A5A7SWM5 ABC transporter B family member 261.9e-4493.68Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGC+RDVGQE++EWAAKQA+AHDFI+SLPNGYQTLVDD+LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

A0A6J1DDF7 ABC transporter B family member 26, chloroplastic isoform X22.0e-46100Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

A0A6J1DG16 ABC transporter B family member 26, chloroplastic isoform X12.0e-46100Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

SwissProt top hitse value%identityAlignment
Q2M3G0 ATP-binding cassette sub-family B member 53.3e-2257.73Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF   +S+NIKYG   DV  E++E AA++A A+DFI+  PN + TLV ++   +SGGQKQRIAIARA++R+P +LILDEATSALD+ES+  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

Q8LPQ6 ABC transporter B family member 283.9e-2360.2Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF + V+ NI YG   + V ++DI  AAK A AHDFIISLP GY TLV +   LLSGGQ+QR+AIAR++L++  +LILDEATSALDA SE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

Q8RY46 ABC transporter B family member 26, chloroplastic3.5e-4083.16Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFR D+SSNIKYGC R++ QEDI  AAKQA+AHDFI +LPNGY T+VDD+LLSGGQKQRIAIARAILRDP +LILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

Q9FHF1 ABC transporter B family member 73.9e-2360.82Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF   + SNI YG      +E+I  AAK A  H+FI SLP GY+T V +    LSGGQKQRIAIARAIL+DP +L+LDEATSALDAESE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

Q9M0M2 ABC transporter B family member 91.0e-2362.89Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF   + SNI YG T    +E+I  AAK A AH+FI SLP GY T V +    LSGGQKQRIAIARAIL+DP +L+LDEATSALDAESE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

Arabidopsis top hitse value%identityAlignment
AT1G70610.1 transporter associated with antigen processing protein 12.5e-4183.16Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEPKLFR D+SSNIKYGC R++ QEDI  AAKQA+AHDFI +LPNGY T+VDD+LLSGGQKQRIAIARAILRDP +LILDEATSALDAESEHNVK
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

AT4G18050.1 P-glycoprotein 97.3e-2562.89Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF   + SNI YG T    +E+I  AAK A AH+FI SLP GY T V +    LSGGQKQRIAIARAIL+DP +L+LDEATSALDAESE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

AT4G25450.1 non-intrinsic ABC protein 82.8e-2460.2Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF + V+ NI YG   + V ++DI  AAK A AHDFIISLP GY TLV +   LLSGGQ+QR+AIAR++L++  +LILDEATSALDA SE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

AT4G25450.3 non-intrinsic ABC protein 82.8e-2460.2Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF + V+ NI YG   + V ++DI  AAK A AHDFIISLP GY TLV +   LLSGGQ+QR+AIAR++L++  +LILDEATSALDA SE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRD-VGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK

AT5G46540.1 P-glycoprotein 72.8e-2460.82Show/hide
Query:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK
        QEP LF   + SNI YG      +E+I  AAK A  H+FI SLP GY+T V +    LSGGQKQRIAIARAIL+DP +L+LDEATSALDAESE  V+
Subjt:  QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDE--LLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGAACCTAAACTTTTCCGCATGGATGTCAGTTCAAACATCAAATATGGATGTACCCGAGACGTAGGACAGGAGGATATTGAATGGGCAGCCAAGCAGGCATTTGCACA
TGACTTCATCATATCGCTGCCCAATGGTTATCAAACACTTGTTGATGATGAATTGCTTAGTGGGGGACAAAAGCAGAGGATAGCTATTGCCCGAGCTATTCTAAGGGATC
CAACCCTTTTGATTCTTGATGAGGCCACTAGCGCACTGGATGCTGAGAGCGAACACAACGTTAAG
mRNA sequenceShow/hide mRNA sequence
CAGGAACCTAAACTTTTCCGCATGGATGTCAGTTCAAACATCAAATATGGATGTACCCGAGACGTAGGACAGGAGGATATTGAATGGGCAGCCAAGCAGGCATTTGCACA
TGACTTCATCATATCGCTGCCCAATGGTTATCAAACACTTGTTGATGATGAATTGCTTAGTGGGGGACAAAAGCAGAGGATAGCTATTGCCCGAGCTATTCTAAGGGATC
CAACCCTTTTGATTCTTGATGAGGCCACTAGCGCACTGGATGCTGAGAGCGAACACAACGTTAAG
Protein sequenceShow/hide protein sequence
QEPKLFRMDVSSNIKYGCTRDVGQEDIEWAAKQAFAHDFIISLPNGYQTLVDDELLSGGQKQRIAIARAILRDPTLLILDEATSALDAESEHNVK