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MS015055 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015055
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome locationscaffold2:872008..872621
RNA-Seq ExpressionMS015055
SyntenyMS015055
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2076198.1 unnamed protein product [Brassica napus]9.0e-3088.73Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSNTISQFS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADY EG+ALD +GLVRYCCRRMLMTHVDLIEKLLNYNSNTIS  S
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSNTISQFS

CAF2153035.1 unnamed protein product, partial [Brassica napus]2.2e-2887.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS-NTISQFS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADY EG+ALD +GLVRYCCRRMLMTHVDLIEKLLNYNS NTIS  S
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS-NTISQFS

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]1.3e-2893.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]1.5e-2998.44Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]5.8e-2995.31Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YLELLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

TrEMBL top hitse value%identityAlignment
A0A0A0KQ80 Uncharacterized protein6.3e-2993.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD+LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A0R0L5R6 Uncharacterized protein1.4e-2885.71Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSNTISQF
        MIIPVRCFTCGKVIGNKWD+YL+LLQ+DY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNSN+ S +
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSNTISQF

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein1.4e-2893.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein1.4e-2893.75Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein7.4e-3098.44Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

SwissProt top hitse value%identityAlignment
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.4e-2887.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD+YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc53.7e-2685.48Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGKVIGNKWD+YL LLQ DY EG+ALD L L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 103.0e-2887.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein4.2e-3090.62Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD+YLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC54.8e-2683.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY
        MIIP+RCFTCGKVIGNKW+SYL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNY

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit2.1e-2987.5Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YL+LLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS

AT1G61700.1 RNA polymerases N / 8 kDa subunit3.0e-3190.62Show/hide
Query:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD+YLELLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACTCTTATCTAGAGCTTCTGCAAGCAGACTATCCGGAAGGGGAGGCGTTGGATTT
ATTAGGGCTAGTTCGGTATTGCTGTCGGCGGATGCTTATGACTCATGTGGATCTGATCGAGAAGCTGTTGAACTACAACAGTAATACAATCTCTCAATTCTCT
mRNA sequenceShow/hide mRNA sequence
ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACTCTTATCTAGAGCTTCTGCAAGCAGACTATCCGGAAGGGGAGGCGTTGGATTT
ATTAGGGCTAGTTCGGTATTGCTGTCGGCGGATGCTTATGACTCATGTGGATCTGATCGAGAAGCTGTTGAACTACAACAGTAATACAATCTCTCAATTCTCT
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVIGNKWDSYLELLQADYPEGEALDLLGLVRYCCRRMLMTHVDLIEKLLNYNSNTISQFS