; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015094 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015094
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein LSM12-like protein A
Genome locationscaffold2:1106379..1108149
RNA-Seq ExpressionMS015094
SyntenyMS015094
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030198 - extracellular matrix organization (biological process)
GO:0030574 - collagen catabolic process (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR019181 - Anticodon-binding domain
IPR039683 - Protein Lsm12-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034336.1 protein LSM12-like protein A [Cucumis melo var. makuwa]2.6e-8094.48Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYL +SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

KGN52415.2 hypothetical protein Csa_008581 [Cucumis sativus]5.2e-8195.71Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

TYK15583.1 protein LSM12-like protein A [Cucumis melo var. makuwa]2.6e-8094.48Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYL +SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

XP_022151106.1 protein LSM12 homolog [Momordica charantia]4.2e-8398.19Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
        MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

XP_038892233.1 protein LSM12 homolog A-like [Benincasa hispida]2.2e-7993.98Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQA
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

TrEMBL top hitse value%identityAlignment
A0A0A0KQA9 AD domain-containing protein1.1e-7993.98Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQA
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

A0A1S3BGE7 protein LSM12 homolog A1.4e-7682.35Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------------EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDL
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                        EGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDL
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------------------------EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDL

Query:  KKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        K CYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYL +SV+GGTPAANERVKKV
Subjt:  KKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

A0A5A7SWT7 Protein LSM12-like protein A1.2e-8094.48Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYL +SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

A0A5D3CUL6 Protein LSM12-like protein A1.2e-8094.48Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGP RNIRLLKANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAE
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRV+SPYL +SV+GGTPAANERVKKV
Subjt:  AERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

A0A6J1DDK3 protein LSM12 homolog2.1e-8398.19Show/hide
Query:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
        MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA
Subjt:  MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

SwissProt top hitse value%identityAlignment
Q5ZML5 Protein LSM12 homolog9.1e-1230.67Show/hide
Query:  GDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEAEA
        G+ F+VGS  S +T      QG+V+ FD PS +L         KP  H +I L+   Y+ E   +    E P  L    L+++ L  +  +   +  ++A
Subjt:  GDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
          I  GV+ E Q +F  + KT+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Subjt:  ERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

Q6GP89 Protein LSM12 homolog1.1e-1230.3Show/hide
Query:  SGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL-----EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEA
        +G G+ FA+G++ S +T      QG+V+ FD PS +L       S    H +I LL  +Y+ +   +    + P  L    L++  L +R  L   +  +
Subjt:  SGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL-----EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEA

Query:  EAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        +A  I  GV+ + Q +F  + KT+   +W +  IVVM+EV +S PY  E+  G    A   V K+
Subjt:  EAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

Q6NSN1 Protein LSM12 homolog B1.5e-1132.34Show/hide
Query:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFL-GHGEDPLDLKKCYLDLNSL--RAREELAIRQA
        G G+ F+VGS  S  T LG   QG+V+ FD PS +L         KP    ++ L+   Y+ E   +    E P  L    L+ N L  RAR E   + +
Subjt:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFL-GHGEDPLDLKKCYLDLNSL--RAREELAIRQA

Query:  EAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
         A A  +  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K+
Subjt:  EAEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

Q6P833 Protein LSM12 homolog9.1e-1230.52Show/hide
Query:  SGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAE
        +G G+ FA+G++ S +T      QG+V+ FD PS +L         KP  H +I LL  +Y+ +   +    + P  L    L++  L +R  L   +  
Subjt:  SGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL------EGSKPGPHRNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAE

Query:  AEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTG
        ++A  I  GV+ + Q +F  + KT+   +W +  IVVM E  +S PY  E+  G
Subjt:  AEAERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTG

Q6PBA2 Protein LSM12 homolog A1.1e-1231.1Show/hide
Query:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPH-----RNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEAE
        G G+ F+VGS  S  T LG   QG+V+ FD PS +L    P         ++ L+   Y+ E   +    E P  L    +   + RAR E   + ++A 
Subjt:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPH-----RNIRLLKANYIKEFTFLG-HGEDPLDLKKCYLDLNSLRAREELAIRQAEAE

Query:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        A  I  GV+ E Q +F  + KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K+
Subjt:  AERIGVGVTSEAQSIFDALSKTL-PVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

Arabidopsis top hitse value%identityAlignment
AT1G24050.1 RNA-processing, Lsm domain3.7e-4558.02Show/hide
Query:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPH--RNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEA
        G G+ FAVG+ +S+K   GDEF+G V+ +D   N +   EG+KP P   +N R++ A++I   ++LG  EDPLD     +DLN LRA+E LAIRQAEA+A
Subjt:  GNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPH--RNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEA

Query:  ERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV
        ER+GVGVT+EAQSIFDALSKTLPV+W+ + I+VM EVRV SPYL++ V GGT AAN RVKKV
Subjt:  ERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV

AT1G70220.1 RNA-processing, Lsm domain4.5e-2232.52Show/hide
Query:  LDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSN-------------------------------------------ILEGSKPGP--HRNIRLLK
        +D  G  + F VG  +++K T GD+F G V+ +D   N                                           + EG+KP P   +++R++ 
Subjt:  LDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSN-------------------------------------------ILEGSKPGP--HRNIRLLK

Query:  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAAN
         NYI E   LG  ++ L  K   ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +V + SPY ++ V GG    N
Subjt:  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAAN

Query:  ERVKKV
        ERVK V
Subjt:  ERVKKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTGGATGGTAGCGGCAATGGGGATGACTTCGCAGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCG
CCCCTCCAACATCCTCGAGGGTTCAAAGCCGGGACCTCATAGGAATATAAGGCTTCTGAAGGCCAATTATATAAAGGAGTTTACATTTTTGGGACATGGCGAAGATCCTC
TTGATCTCAAAAAGTGTTACCTCGATCTCAATTCTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAAGCAGAGGCAGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGC
GAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCCGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTACCTAGCAGA
ATCCGTTACTGGAGGCACCCCCGCTGCAAATGAGCGGGTGAAGAAAGTG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTGGATGGTAGCGGCAATGGGGATGACTTCGCAGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCG
CCCCTCCAACATCCTCGAGGGTTCAAAGCCGGGACCTCATAGGAATATAAGGCTTCTGAAGGCCAATTATATAAAGGAGTTTACATTTTTGGGACATGGCGAAGATCCTC
TTGATCTCAAAAAGTGTTACCTCGATCTCAATTCTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAAGCAGAGGCAGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGC
GAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCCGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAGTCCCTACCTAGCAGA
ATCCGTTACTGGAGGCACCCCCGCTGCAAATGAGCGGGTGAAGAAAGTG
Protein sequenceShow/hide protein sequence
MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPHRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTS
EAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKV