CuGenDBv2

Gene ID	MS015136
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RRM domain-containing protein
Genome location	scaffold2:1387222..1388330
RNA-Seq Expression	MS015136
Synteny	MS015136
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151094.1 uncharacterized protein At1g27050 [Momordica charantia]

3.7e-102

99.48

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        MSRKRDKP+PSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

9.2e-85

85.05

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Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

5.4e-85

85.05

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

9.2e-85

84.54

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Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LAST+VNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

6.8e-88

86.6

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Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H+PTSV+KRRRP PP PSP ED+D+DKP+ KPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+S+ SSR DVPFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

1.0e-81

82.47

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H+PTS +KRRRP    P    DDD++KP+ KPAPP ALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAM 
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGR N+LASTIVNPR+S+ SSR DVPFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

1.0e-81

82.47

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H+PTS +KRRRP    P    DDD++KP+ KPAPP ALV+VDLPS CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAM 
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGR N+LASTIVNPR+S+ SSR DVPFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

1.8e-102

99.48

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        MSRKRDKP+PSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

4.5e-85

85.05

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

2.6e-85

85.05

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        M RKRDKP+PS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

2.5e-53

54.37

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        MSRKRDKP+ +RH P  +SKRRRP  P  S   D+ IDKPI KP PPPALV++ LP+NCSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----------CSSRLDVPFRAREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K+  +  SSKLLR  +PL +HGR +RLAS IVNPR  +           S       + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----------CSSRLDVPFRAREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

1.8e-54

54.37

Show/hide

Query:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA
        MSRKRDKP+ +RH P  +SKRRRP  P  S   D+ IDKPI KP PPPALV++ LP+NCSVL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A
Subjt:  MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----------CSSRLDVPFRAREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K+  +  SSKLLR  +PL +HGR +RLAS IVNPR  +           S       + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----------CSSRLDVPFRAREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGTCGCAAGAGAGACAAACCCTTTCCTTCCCGCCACGTCCCTACCTCCGTCTCAAAGAGGCGGCGCCCTCTGCCGCCGGTACCGTCGCCGCCGGAGGACGACGATAT
AGACAAGCCCATACCCAAGCCCGCGCCGCCGCCTGCCCTGGTCATCGTTGACCTACCTTCAAACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATTTACGGATCCA
TCTCCCGCATCCGCATCGACCGTGATTGTGTTGGTTTCATCGCTTATCGCACTAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTCGACCCCTCCTTCGGCTTCACC
ATTGACTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGGCAAGGGATTAACGTTGGGGTTAACAAGAAAAACGAACTGTCGTCAAAGCTCTT
GCGGGCAGAAGTGCCACTGAGCAGACATGGCAGAGGCAATAGACTTGCTTCAACTATTGTAAACCCCAGAAAAAGTGACTGTTCTTCAAGGTTGGACGTGCCTTTCAGGG
CCAGGGAAGTTGTTGCTTATGATGATATTCTC

mRNA sequence

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Protein sequence

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MSRKRDKPFPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

MS015136 (gene) of Bitter gourd (TR) v1 genome