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MS015141 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015141
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein TWIN LOV 1
Genome locationscaffold2:1421081..1421422
RNA-Seq ExpressionMS015141
SyntenyMS015141
Gene Ontology termsGO:0009637 - response to blue light (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009881 - photoreceptor activity (molecular function)
InterPro domainsIPR000014 - PAS domain
IPR000700 - PAS-associated, C-terminal
IPR035965 - PAS domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601409.1 Protein TWIN LOV 1, partial [Cucurbita argyrosperma subsp. sororia]6.0e-5288.6Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFTITDP+I+GHPIVFVSRGFLKMTGY+++EVIGKNGRMFQGPKT RSSVMQIREA+REEK IQINLLNYRKDGTP+WVFFQ+SPVF KE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRII+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

KAG7032188.1 Protein TWIN LOV 1 [Cucurbita argyrosperma subsp. argyrosperma]6.0e-5288.6Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFTITDP+I+GHPIVFVSRGFLKMTGY+++EVIGKNGRMFQGPKT RSSVMQIREA+REEK IQINLLNYRKDGTP+WVFFQ+SPVF KE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRII+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

XP_022151128.1 protein TWIN LOV 1 isoform X1 [Momordica charantia]4.3e-58100Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRIINFVGVQVPI
Subjt:  DGRIINFVGVQVPI

XP_022151129.1 protein TWIN LOV 1 isoform X2 [Momordica charantia]4.3e-58100Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRIINFVGVQVPI
Subjt:  DGRIINFVGVQVPI

XP_023537915.1 protein TWIN LOV 1 [Cucurbita pepo subsp. pepo]6.0e-5288.6Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFTITDP+I+GHPIVFVSRGFLKMTGY+++EVIGKNGRMFQGPKT RSSVMQIREA+REEK IQINLLNYRKDGTP+WVFFQ+SPVF KE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRII+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

TrEMBL top hitse value%identityAlignment
A0A0A0KSK8 Uncharacterized protein1.2e-5087.72Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFTITDP IAGHPIVFVS GFLKMTGY+++EVIGKNG+MFQGP+TSRSSVM IREAVREEK IQINLLNYRKDGTP+WVFFQM+PVFSKE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DG+II+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

A0A6J1DBC3 protein TWIN LOV 1 isoform X12.1e-58100Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRIINFVGVQVPI
Subjt:  DGRIINFVGVQVPI

A0A6J1DC37 protein TWIN LOV 1 isoform X22.1e-58100Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRIINFVGVQVPI
Subjt:  DGRIINFVGVQVPI

A0A6J1GXM3 protein TWIN LOV 15.0e-5287.72Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFT+TDP+I+GHPIVFVSRGFLKMTGY+++EVIGKNGRMFQGPKT RSSVMQIREA+REEK IQINLLNYRKDGTP+WVFFQ+SPVF KE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRII+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

A0A6J1KI06 protein TWIN LOV 16.5e-5287.72Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        VREALNDL DNFTITDP+++GHPIVFVSRGFLKMTGY+++EVIGKNGRMFQGPKT RSSVMQIREA+REEK IQINLLNYRKDGTP+WVFFQ+SPVF KE
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DGRII+FVGVQVPI
Subjt:  DGRIINFVGVQVPI

SwissProt top hitse value%identityAlignment
O64511 Protein TWIN LOV 11.7e-4467.54Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        ++EAL +LP NFTITDP I+GHPIVF S GFLKMTGYS +EVIG+NG++FQGPKT+R S+M+IREA+REE+++Q++LLNYRK G+P+W+ F M PVF K+
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DG++ NFV VQVPI
Subjt:  DGRIINFVGVQVPI

P93025 Phototropin-21.3e-2038.89Show/hide
Query:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI
        L  +  NF I+DP +  +PI+F S  FL++T YS +E++G+N R  QGP+T +++V +IR+A+R+++ I + L+NY K G  +W  F + P+   + G +
Subjt:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI

Query:  INFVGVQV
          F+GVQ+
Subjt:  INFVGVQV

Q48IV1 Blue-light-activated protein4.8e-2047.52Show/hide
Query:  ITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRIINFVGVQVP
        +TDP  A +PI+F +R FL+MTGYS +E+IG N R  QGP+T R+ V  IREA+ E   I   +LNYRKDG+ +W    +SPV++ + G +I F   Q+ 
Subjt:  ITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRIINFVGVQVP

Query:  I
        I
Subjt:  I

Q8LPD9 Phototropin5.2e-2243.75Show/hide
Query:  EALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDG
        + L  L   F + D T+   P+V+ S GF  MTGY  DEV+G N R  QG  T    V +IR+A+++ +A  + LLNYRKDGTP+W    ++P+    DG
Subjt:  EALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDG

Query:  RIINFVGVQVPI
        R+  FVGVQV +
Subjt:  RIINFVGVQVPI

Q9ST27 Phototropin-21.5e-2142.59Show/hide
Query:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI
        L  +  NF ITDP I  +PI+F S  FL++T Y+ +E++G+N R  QGP+T + +V +IREA+RE+K I + L+NY K G  +W  F + P+   + G +
Subjt:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI

Query:  INFVGVQV
          F+GVQ+
Subjt:  INFVGVQV

Arabidopsis top hitse value%identityAlignment
AT2G02710.1 PAS/LOV protein B1.2e-4567.54Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        ++EAL +LP NFTITDP I+GHPIVF S GFLKMTGYS +EVIG+NG++FQGPKT+R S+M+IREA+REE+++Q++LLNYRK G+P+W+ F M PVF K+
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DG++ NFV VQVPI
Subjt:  DGRIINFVGVQVPI

AT2G02710.2 PAS/LOV protein B1.2e-4567.54Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        ++EAL +LP NFTITDP I+GHPIVF S GFLKMTGYS +EVIG+NG++FQGPKT+R S+M+IREA+REE+++Q++LLNYRK G+P+W+ F M PVF K+
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DG++ NFV VQVPI
Subjt:  DGRIINFVGVQVPI

AT2G02710.3 PAS/LOV protein B1.2e-4567.54Show/hide
Query:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE
        ++EAL +LP NFTITDP I+GHPIVF S GFLKMTGYS +EVIG+NG++FQGPKT+R S+M+IREA+REE+++Q++LLNYRK G+P+W+ F M PVF K+
Subjt:  VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKE

Query:  DGRIINFVGVQVPI
        DG++ NFV VQVPI
Subjt:  DGRIINFVGVQVPI

AT5G58140.2 phototropin 29.1e-2238.89Show/hide
Query:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI
        L  +  NF I+DP +  +PI+F S  FL++T YS +E++G+N R  QGP+T +++V +IR+A+R+++ I + L+NY K G  +W  F + P+   + G +
Subjt:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI

Query:  INFVGVQV
          F+GVQ+
Subjt:  INFVGVQV

AT5G58140.4 phototropin 29.1e-2238.89Show/hide
Query:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI
        L  +  NF I+DP +  +PI+F S  FL++T YS +E++G+N R  QGP+T +++V +IR+A+R+++ I + L+NY K G  +W  F + P+   + G +
Subjt:  LNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRI

Query:  INFVGVQV
          F+GVQ+
Subjt:  INFVGVQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCGTGAAGCTCTTAACGATTTGCCGGATAATTTTACAATCACTGATCCCACTATAGCTGGTCACCCAATTGTGTTCGTGAGCCGCGGATTCTTGAAGATGACTGGATA
TTCCGAAGACGAGGTGATTGGCAAAAATGGGAGGATGTTTCAGGGCCCGAAAACTAGCAGGAGTTCAGTAATGCAAATTCGCGAGGCAGTTCGGGAAGAGAAGGCCATTC
AAATTAACTTGCTAAATTATCGCAAAGATGGGACACCCTATTGGGTCTTTTTCCAAATGAGCCCCGTTTTCAGCAAGGAAGATGGGCGGATCATTAATTTTGTGGGTGTT
CAGGTGCCGATT
mRNA sequenceShow/hide mRNA sequence
GTTCGTGAAGCTCTTAACGATTTGCCGGATAATTTTACAATCACTGATCCCACTATAGCTGGTCACCCAATTGTGTTCGTGAGCCGCGGATTCTTGAAGATGACTGGATA
TTCCGAAGACGAGGTGATTGGCAAAAATGGGAGGATGTTTCAGGGCCCGAAAACTAGCAGGAGTTCAGTAATGCAAATTCGCGAGGCAGTTCGGGAAGAGAAGGCCATTC
AAATTAACTTGCTAAATTATCGCAAAGATGGGACACCCTATTGGGTCTTTTTCCAAATGAGCCCCGTTTTCAGCAAGGAAGATGGGCGGATCATTAATTTTGTGGGTGTT
CAGGTGCCGATT
Protein sequenceShow/hide protein sequence
VREALNDLPDNFTITDPTIAGHPIVFVSRGFLKMTGYSEDEVIGKNGRMFQGPKTSRSSVMQIREAVREEKAIQINLLNYRKDGTPYWVFFQMSPVFSKEDGRIINFVGV
QVPI