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MS015158 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015158
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor PRE6-like
Genome locationscaffold2:1532640..1533310
RNA-Seq ExpressionMS015158
SyntenyMS015158
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]7.3e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]1.1e-38100Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

XP_022945906.1 transcription factor PRE6-like [Cucurbita moschata]7.3e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLS+RLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]5.6e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLS+RLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]2.3e-3695.79Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator3.5e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like7.9e-3592.63Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLS+RLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like5.3e-39100Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like3.5e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLS+RLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like2.7e-3593.68Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLS+RLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI62.1e-2471.58Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSR SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLSERLSELLA++D  SAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI62.1e-2471.58Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MSSR SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLSERLSELLA++D  SAQAAIIRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE61.1e-2576.34Show/hide
Query:  SSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLS+RLSELLASTD  SA+AAIIRSLL
Subjt:  SSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE36.0e-2470.21Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLSERLSELLA++D  +AQAA+IRSLL
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE22.3e-2367.78Show/hide
Query:  SSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLS+RL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.8e-2776.34Show/hide
Query:  SSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLS+RLSELLASTD  SA+AAIIRSLL
Subjt:  SSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 14.3e-2570.21Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLSERLSELLA++D  +AQAA+IRSLL
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.1e-2365.26Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS+R  RSR++   SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LS+RLS+LL S D +S +AA+IRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 21.6e-2467.78Show/hide
Query:  SSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL
        SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLS+RL++LL S DP S QAA+IRSL+
Subjt:  SSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.5e-2262.11Show/hide
Query:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM
        MS+R SR   S   +  ISD+Q+ DL+SKL+Q++PEI   R S + SASKVLQETCNYIR+L REVD+LSERLS+LL S D +S +AA+IRSLLM
Subjt:  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAGCAGAAGCTCGCGTTCCAGACGCTCGCCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGAT
TCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTATTGCAGGAGACGTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGACCTAAGCGAGCGGTTAT
CGGAGCTATTGGCGTCTACGGATCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTTATG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAGCAGAAGCTCGCGTTCCAGACGCTCGCCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGAT
TCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTATTGCAGGAGACGTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGACCTAAGCGAGCGGTTAT
CGGAGCTATTGGCGTCTACGGATCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTTATG
Protein sequenceShow/hide protein sequence
MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM