CuGenDBv2

Gene ID	MS015201
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	scaffold2:1753206..1754040
RNA-Seq Expression	MS015201
Synteny	MS015201
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR011332 - Zinc-binding ribosomal protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-47

88.39

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAM  VLPH SP+SGIMDRKDS PPLVLPEFNHESD D I NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

XP_022151273.1 uncharacterized protein LOC111019232 [Momordica charantia]

5.2e-56

100

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

5.7e-47

87.5

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAMANVLPH SP++GI+ RKDS PPLVLPEFNHESD D I NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

5.2e-48

89.29

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAMA VLPH SP+SGIMD KDS PPLVLPEFNHESD D I NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

1.8e-48

89.29

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAM  VLPH SP+SGIMDRKDS PPLVLPEFNHESD DRI NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

4.6e-42

80.36

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQ  SMLGLKAMA  LPH SP+SG+M  KDS PPLVLPEFN E D D+  NCS VGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVI+RCK
Subjt:  ALKPIPVIIRCK

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

8.7e-41

82.14

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQT SMLGLKAMA  LPH S   G+M  KDS PPLVLPEFN ESD DRI NCS VGFGFPSL FSGSMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

2.5e-56

100

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

2.8e-47

87.5

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAMANVLPH SP++GI+ RKDS PPLVLPEFNHESD D I NCS VGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

2.5e-48

89.29

Show/hide

Query:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RAVEGQT SM GLKAMA VLPH SP+SGIMD KDS PPLVLPEFNHESD D I NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIIRCK
        ALKPIPVIIRCK
Subjt:  ALKPIPVIIRCK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

9.2e-27

53.51

Show/hide

Query:  MALRI--MRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNG
        MALR+  ++    ++C +L  +++++V    SPL+G  DR  S PPLVLPEF  + +   +    S GFG PS +F+GSMELMAVPK+K+S HKRGIRNG
Subjt:  MALRI--MRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNG

Query:  PKALKPIPVIIRCK
        PKALKP+PVIIRC+
Subjt:  PKALKPIPVIIRCK

AT1G69485.1 Ribosomal L32p protein family

2.4e-11

82.86

Show/hide

Query:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK
        MELMAVPK+K+S HKRGIRNGPKA KP PVIIRC+
Subjt:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTTGAGGATTATGAGGGCGGTTGAGGGTCAGACATGTTCGATGCTAGGGCTCAAGGCGATGGCTAATGTTTTACCCCATTTTTCGCCGTTATCTGGGATCATGGA
CCGAAAGGATTCTACGCCGCCGCTGGTTCTGCCGGAGTTTAACCATGAATCTGATAGCGATAGGATCGGCAACTGCAGTAGTGTGGGATTTGGCTTCCCTAGTTTATCTT
TTTCCGGGTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGAGGCATAAGAAATGGCCCAAAAGCTCTAAAACCTATTCCAGTTATAATTCGG
TGCAAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIGNCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIR
CK

MS015201 (gene) of Bitter gourd (TR) v1 genome