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MS015202 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015202
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGCK domain-containing protein
Genome locationscaffold2:1762028..1762612
RNA-Seq ExpressionMS015202
SyntenyMS015202
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR012891 - GCK


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446394.1 PREDICTED: transcription elongation factor spt5-like [Cucumis melo]5.8e-6374.49Show/hide
Query:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD
        T S++NP  PPAPTRMSTSESKLQ +ESNAAASKTLEDQ    S    +EK+S E   SGKI ESGG DEGGED+  EEEEEEEGECGFCLFMKGGGCRD
Subjt:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD

Query:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        SF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH DYY PILKAEK+AEEEAIIELEKE+A +A+Q++T            NS+EQKASAGGK
Subjt:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

XP_022151071.1 uncharacterized protein LOC111019093 [Momordica charantia]1.2e-9598.97Show/hide
Query:  PPLTESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS
        PPLTESAANPTTPPAPTRMSTSESKLQASESNAA SKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS
Subjt:  PPLTESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS

Query:  FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQN NSRGPEVNVGSENSEEQKASAGGK
Subjt:  FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

XP_022997117.1 uncharacterized protein LOC111492108 [Cucurbita maxima]1.5e-5875.98Show/hide
Query:  MSTSESKLQASESN--AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEK
        MSTSESKLQ +ESN  AAA+KT EDQ  +G+    EEK+   S +SGKI ESGG+DEGGEDL   +EEEEGECGFCLFMKGGGCRDSF++WEKCIEEAEK
Subjt:  MSTSESKLQASESN--AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEK

Query:  NKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA
        NKEDIVEKCFEVTGALKKCMEAHADYY PILKAEK+AE EAIIELEKE   NATQQ+T+S+  EV  G+EN EEQKASA
Subjt:  NKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA

XP_023536143.1 uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo]1.6e-5775.84Show/hide
Query:  MSTSESKLQASESN-AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKN
        MSTSESKLQ +ESN AAA+KT EDQ  +G+    EEK+   S +SGKI  SGG+DEGGEDL   +EEEEGECGFCLFMKGGGCRDSF++WEKCIEEAEKN
Subjt:  MSTSESKLQASESN-AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKN

Query:  KEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA
        KEDIVEKCFEVTGALKKCMEAHADYY PILKAEK+AE EAIIELEKE   NATQQ+T+S   EV  G+EN EEQKASA
Subjt:  KEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA

XP_038893081.1 uncharacterized protein LOC120081968 [Benincasa hispida]8.1e-6580Show/hide
Query:  MSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEK---NSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNK
        MSTSESKLQ +ES AAA+KTLEDQ   GS+   EEK    SA+SG+IPESGG DE GEDL   EEEEEGECGFCLFMKGGGC+DSF++WEKCIEEAEKNK
Subjt:  MSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEK---NSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNK

Query:  EDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        EDIVEKCFEVTGALKKCMEAHADYY PILKAEK+AEEEAIIELEKE+  NATQQN+NS+  EVN GSEN EEQKASAGGK
Subjt:  EDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

TrEMBL top hitse value%identityAlignment
A0A1S3BFM8 transcription elongation factor spt5-like2.8e-6374.49Show/hide
Query:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD
        T S++NP  PPAPTRMSTSESKLQ +ESNAAASKTLEDQ    S    +EK+S E   SGKI ESGG DEGGED+  EEEEEEEGECGFCLFMKGGGCRD
Subjt:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD

Query:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        SF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH DYY PILKAEK+AEEEAIIELEKE+A +A+Q++T            NS+EQKASAGGK
Subjt:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

A0A5A7SVC8 Transcription elongation factor spt5-like2.8e-6374.49Show/hide
Query:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD
        T S++NP  PPAPTRMSTSESKLQ +ESNAAASKTLEDQ    S    +EK+S E   SGKI ESGG DEGGED+  EEEEEEEGECGFCLFMKGGGCRD
Subjt:  TESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDL-AEEEEEEEGECGFCLFMKGGGCRD

Query:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        SF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH DYY PILKAEK+AEEEAIIELEKE+A +A+Q++T            NS+EQKASAGGK
Subjt:  SFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

A0A6J1DDG6 uncharacterized protein LOC1110190935.6e-9698.97Show/hide
Query:  PPLTESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS
        PPLTESAANPTTPPAPTRMSTSESKLQASESNAA SKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS
Subjt:  PPLTESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDS

Query:  FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQN NSRGPEVNVGSENSEEQKASAGGK
Subjt:  FMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

A0A6J1G1F8 uncharacterized protein LOC1114498163.0e-5774.44Show/hide
Query:  MSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNK
        MSTS SKLQ +ESNAAA+KTLED+   GS I  EEK+S E   SGKIPESGG+D         EEEEEGECGFCLFMKGGGC+DSF++WEKCIEEAEKNK
Subjt:  MSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAE---SGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNK

Query:  EDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK
        EDIVEKCFEVTGALKKCMEAHADYY PILKAEK+AEEEAIIELEKE+  +A     NS   EVN GS NSEEQKASAG K
Subjt:  EDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK

A0A6J1K434 uncharacterized protein LOC1114921087.2e-5975.98Show/hide
Query:  MSTSESKLQASESN--AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEK
        MSTSESKLQ +ESN  AAA+KT EDQ  +G+    EEK+   S +SGKI ESGG+DEGGEDL   +EEEEGECGFCLFMKGGGCRDSF++WEKCIEEAEK
Subjt:  MSTSESKLQASESN--AAASKTLEDQAPIGSNIVQEEKN---SAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEK

Query:  NKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA
        NKEDIVEKCFEVTGALKKCMEAHADYY PILKAEK+AE EAIIELEKE   NATQQ+T+S+  EV  G+EN EEQKASA
Subjt:  NKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G14048.1 GCK domain-containing protein5.7e-0842.35Show/hide
Query:  EEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCME-AHADYYAPILKAEKVAEEEAIIELEKEL
        EEEE+GE  F  FM+GGGC++ F DWE C +EA             V   + KCM     D+Y P L A+K A+E     +EKEL
Subjt:  EEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKNKEDIVEKCFEVTGALKKCME-AHADYYAPILKAEKVAEEEAIIELEKEL

AT1G14060.1 GCK domain-containing protein1.8e-3052.87Show/hide
Query:  ESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDW
        +S  N   PPA      SE    AS S  A S+ L D     S+ V  +   +ES + PE GG   GG    + + EEEGECGFCLFMKGGGC+DSF+ W
Subjt:  ESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDW

Query:  EKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKE
        E+C+E AEKNKEDIV  C EVT  LKKCM+ H+DYY PIL AEK AE E   ELE E
Subjt:  EKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKE

AT5G02210.1 GCK domain-containing protein4.1e-1450.55Show/hide
Query:  EEEEEEGECGFCLFMKGGGCRDSFMDW-EKC---IEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELAS
        +E  EE +  F  FMKGGGC++SF  W + C    EEAEKNK D+V KC  + G   KCM+ H+DYY PIL  +K  EE     LEKELA+
Subjt:  EEEEEEGECGFCLFMKGGGCRDSFMDW-EKC---IEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELAS

AT5G57570.1 GCK domain-containing protein7.2e-1142.86Show/hide
Query:  EEKNSAESGKIPESGGDDEGG---EDLAEE-----EEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKN-KEDIVEKCFEVTGALKKCMEAHADYYAP
        +E  SA  G+   S  +DE     EDL E      EEEE GEC  C F+KGG C++SF+  E+C++EAE++ +E    KC EV    K CM  +  YY P
Subjt:  EEKNSAESGKIPESGGDDEGG---EDLAEE-----EEEEEGECGFCLFMKGGGCRDSFMDWEKCIEEAEKN-KEDIVEKCFEVTGALKKCMEAHADYYAP

Query:  ILKAE
        IL  E
Subjt:  ILKAE

AT5G57640.1 GCK domain-containing protein5.9e-1334.84Show/hide
Query:  APTRMSTSESKLQASESNAAASKTLEDQAPI--GSNIVQEEKNSAESGKIPESGGDDEGGEDLAE---EEEEEEGECGFCLFMKGGGCRDSFMDWEKCIE
        A  +     S  Q    + +    +EDQ  +     + +++ +  ES  + E  GD+E  + L E   E EEE GEC  C F+KGG C+++F + E C +
Subjt:  APTRMSTSESKLQASESNAAASKTLEDQAPI--GSNIVQEEKNSAESGKIPESGGDDEGGEDLAE---EEEEEEGECGFCLFMKGGGCRDSFMDWEKCIE

Query:  EAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIEL---EKE
        EA+KN ED V KC E     K CM  +  YY P+L  E  A  + + EL   EKE
Subjt:  EAEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIEL---EKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGCCACTTACAGAGTCAGCTGCGAATCCGACGACTCCTCCGGCACCCACAAGGATGTCCACTTCGGAGTCGAAACTCCAAGCCTCAGAATCAAACGCCGCCGCCTCTAA
AACCCTCGAGGATCAAGCCCCAATTGGTTCTAACATTGTCCAAGAAGAAAAAAATTCCGCGGAGTCTGGAAAGATACCCGAGAGCGGGGGTGATGATGAAGGAGGGGAGG
ATCTAGCGGAGGAGGAAGAGGAGGAGGAGGGGGAGTGTGGGTTTTGCTTGTTCATGAAAGGGGGCGGTTGCAGAGATAGCTTCATGGATTGGGAGAAGTGCATTGAGGAG
GCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACTGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGCGCCGATTCTCAAGGCCGA
GAAAGTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAACTGGCTTCAAATGCTACGCAGCAAAATACGAATTCCAGAGGCCCGGAGGTAAATGTGGGTTCCGAGA
ATTCAGAAGAACAGAAGGCTTCTGCTGGTGGTAAG
mRNA sequenceShow/hide mRNA sequence
CCGCCACTTACAGAGTCAGCTGCGAATCCGACGACTCCTCCGGCACCCACAAGGATGTCCACTTCGGAGTCGAAACTCCAAGCCTCAGAATCAAACGCCGCCGCCTCTAA
AACCCTCGAGGATCAAGCCCCAATTGGTTCTAACATTGTCCAAGAAGAAAAAAATTCCGCGGAGTCTGGAAAGATACCCGAGAGCGGGGGTGATGATGAAGGAGGGGAGG
ATCTAGCGGAGGAGGAAGAGGAGGAGGAGGGGGAGTGTGGGTTTTGCTTGTTCATGAAAGGGGGCGGTTGCAGAGATAGCTTCATGGATTGGGAGAAGTGCATTGAGGAG
GCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACTGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGCGCCGATTCTCAAGGCCGA
GAAAGTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAACTGGCTTCAAATGCTACGCAGCAAAATACGAATTCCAGAGGCCCGGAGGTAAATGTGGGTTCCGAGA
ATTCAGAAGAACAGAAGGCTTCTGCTGGTGGTAAG
Protein sequenceShow/hide protein sequence
PPLTESAANPTTPPAPTRMSTSESKLQASESNAAASKTLEDQAPIGSNIVQEEKNSAESGKIPESGGDDEGGEDLAEEEEEEEGECGFCLFMKGGGCRDSFMDWEKCIEE
AEKNKEDIVEKCFEVTGALKKCMEAHADYYAPILKAEKVAEEEAIIELEKELASNATQQNTNSRGPEVNVGSENSEEQKASAGGK