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MS015238 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015238
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Genome locationscaffold2:1974520..1974768
RNA-Seq ExpressionMS015238
SyntenyMS015238
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.1e-0745.68Show/hide
Query:  VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLEN
        +LEGLR+A  LN Q VQFE+DSL+L+NL+  D  +   SNV ++DIR L + F +F  +HV   +N+   +VASF    +N
Subjt:  VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLEN
TrEMBL top hitse value%identityAlignment
A0A6J1CNR4 uncharacterized protein LOC1110129505.5e-0845.68Show/hide
Query:  VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLEN
        +LEGLR+A  LN Q VQFE+DSL+L+NL+  D  +   SNV ++DIR L + F +F  +HV   +N+   +VASF    +N
Subjt:  VLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLEN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42965.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0533.33Show/hide
Query:  VVLEGLRMAIM----LNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLENF
        V LE +R A +     N++ V FE+DS  LV+L+  D++  N++  R++DIR++ + F   K++H++   N V  ++A    SL N+
Subjt:  VVLEGLRMAIM----LNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLENF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTGCTCGAAGGTCTTCGAATGGCAATTATGTTGAATTTCCAATCGGTGCAATTTGAGACTGATTCCCTCAAGCTAGTCAATCTAATTATTGGAGACTCTGAAGCTCA
TAACGTTTCCAACGTTCGGGTGAAGGATATTCGAAATCTGGTGAAATTTTTTTCCAATTTTAAGATTGTCCATGTGCGGTGTATCACGAACAGGGTTGTCCATAAGGTGG
CTTCTTTTGTGTTTTCTTTAGAGAATTTT
mRNA sequenceShow/hide mRNA sequence
GTTGTGCTCGAAGGTCTTCGAATGGCAATTATGTTGAATTTCCAATCGGTGCAATTTGAGACTGATTCCCTCAAGCTAGTCAATCTAATTATTGGAGACTCTGAAGCTCA
TAACGTTTCCAACGTTCGGGTGAAGGATATTCGAAATCTGGTGAAATTTTTTTCCAATTTTAAGATTGTCCATGTGCGGTGTATCACGAACAGGGTTGTCCATAAGGTGG
CTTCTTTTGTGTTTTCTTTAGAGAATTTT
Protein sequenceShow/hide protein sequence
VVLEGLRMAIMLNFQSVQFETDSLKLVNLIIGDSEAHNVSNVRVKDIRNLVKFFSNFKIVHVRCITNRVVHKVASFVFSLENF