CuGenDBv2

Gene ID	MS015254
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	scaffold2:2091339..2091464
RNA-Seq Expression	MS015254
Synteny	MS015254
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR001135 - NADH-quinone oxidoreductase, subunit D IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009440035.1 NADH dehydrogenase subunit 7 [Gynostemma pentagynum]

2.1e-10

78.57

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVEE+GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

YP_009468918.1 NADH dehydrogenase subunit 7 [Gynostemma compressum]

1.4e-09

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

YP_009752375.1 NADH dehydrogenase subunit H [Bryonia marmorata]

1.0e-09

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L +  +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

YP_009752798.1 NADH dehydrogenase subunit H [Cyclantheropsis parviflora]

1.0e-09

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

YP_009752883.1 NADH dehydrogenase subunit H [Baijiania yunnanensis]

1.4e-09

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

TrEMBL top hits

e value

%identity

Alignment

A0A109WZQ2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.6e-10

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

A0A291IAV5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.0e-10

78.57

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVEE+GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

A0A6H0ERF6 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.6e-10

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

A0A6H0ES32 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.1e-10

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L +  +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

A0A6H0ET07 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.1e-10

76.19

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

SwissProt top hits

e value

%identity

Alignment

A9LYF6 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.5e-11

78.38

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Query:  KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        +Y KLITQNPIFLERVE +GII GEE INWGLS PM+
Subjt:  KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Q06GL1 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.3e-10

73.81

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLITQNPIFLERVE IGII GEE INWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Q06GU0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.5e-11

71.43

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLIT+NPIFLERVEE+GII GEE INWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Q3V4X8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.5e-11

78.38

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Query:  KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        +Y KLITQNPIFLERVE +GII GEE INWGLS PM+
Subjt:  KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

2.0e-11

73.81

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L +  +Y KLITQNPIFLERVE +GII GEEVINWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

3.5e-11

69.05

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Query:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV
        L    +Y KLIT+NPIFLERVE +GII GEE INWGLS PM+
Subjt:  LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Sequences

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CDS sequence

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TTGCTAAGCACTCCTAAATATCATAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTCGAAGAAATAGGCATTATTTGTGGAGAAGAAGTAATAAATTGGGGATT
ATCGAGACCCATGGTT

mRNA sequence

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TTGCTAAGCACTCCTAAATATCATAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTCGAAGAAATAGGCATTATTTGTGGAGAAGAAGTAATAAATTGGGGATT
ATCGAGACCCATGGTT

Protein sequence

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LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

MS015254 (gene) of Bitter gourd (TR) v1 genome