; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015318 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015318
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent Clp protease adapter protein CLPS1, chloroplastic
Genome locationscaffold2:2567130..2569260
RNA-Seq ExpressionMS015318
SyntenyMS015318
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013044.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.8e-7890.57Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLALSPNHVFNPKPG+++ VC+GLCS+L A++VKSATTAG+GGGLLERPVIEKATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAH NG+SLVIICAQADAEEHC QLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

XP_008446565.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo]2.4e-7889.94Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEKATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

XP_022150471.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia]7.5e-8598.74Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLALSPNHVFNP+PGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRES+FDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

XP_022968529.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]6.8e-7891.88Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV
        MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+L A++VKSATTAG+ GGGLLERPVIEKATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAH NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

XP_038891525.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida]1.8e-7891.19Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+ GA++VKSA TAG+GGGLLERPVIEKATPGRES+FDLR+SRK TPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAH NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

TrEMBL top hitse value%identityAlignment
A0A0A0KWD9 ClpS domain-containing protein2.1e-7790.57Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAI GKLALSPNHVFNPKPGD++ VC+GLC + GA++VKSA TAG+GGGLLERPVIEKATPGRES+FDLRRSRK TPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAE HCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

A0A1S3BG61 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X11.1e-7889.94Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEKATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

A0A5A7STJ9 ATP-dependent Clp protease adapter protein CLPS11.1e-7889.94Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLA+SPNHVFNPKPGD++ +C+GLC + GA++VKSA TAG+GGGLLERPVIEKATPGRES+FD+RRSRK TPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

A0A6J1DBL1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic3.7e-8598.74Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
        MEIAICGKLALSPNHVFNP+PGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRES+FDLRRSRKTTPPYRVILHNDDFNKREYVVQVL
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVL

Query:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  MKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

A0A6J1HZX0 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like3.3e-7891.88Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV
        MEIAICGKLALSPNHVFNPKPGD++ VC+GLCS+L A++VKSATTAG+ GGGLLERPVIEKATPGRES+FDLRRSRKTTPPYRVILHNDDFN+REYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGK-GGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
        LMKVIPGMTLDNAVNIMQEAH NGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC
Subjt:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic2.5e-2242.11Show/hide
Query:  CVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS
        C  +G   +      ++       GG+++ P     T  ++    + RS+K  P Y+V+LHND++NKREYVV+VL+KV+  +T+D+AV  MQEAH  G++
Subjt:  CVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLS

Query:  LVIICAQADAEEHCMQLRGNGLLSSIEPASGGC
        LV+ C Q +AE +C  LR NGL S+IEP  GGC
Subjt:  LVIICAQADAEEHCMQLRGNGLLSSIEPASGGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS4.4e-1959.49Show/hide
Query:  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP
        RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    AE +C QL+ +GL SSIEP
Subjt:  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS3.3e-1443.62Show/hide
Query:  TPGRESKFDL--RRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP
        +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ LVI+C    AE +C  L+  GL SSIEP
Subjt:  TPGRESKFDL--RRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS2.0e-1657.53Show/hide
Query:  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGL
        RK  P YRV+LHNDDFN  EYVV VLM+ +P +T   AV+IM EAH NG  LVI C    AE +C QL+ +GL
Subjt:  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic5.5e-6271.07Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV
        ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IEK TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC
        LMKVIPGMT+DNAVNIMQEAH NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein3.9e-6371.07Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV
        ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IEK TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC
        LMKVIPGMT+DNAVNIMQEAH NGL++VI+CAQADAE+HCMQLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein9.9e-4355.35Show/hide
Query:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV
        ME AICG+LAL+P+ +FN K GDK+ V +G C +    +  S + A GKGGG+L++P+IEK TPGRES+FDLR+S+K  PPYRVILHND+FNKREYVVQV
Subjt:  MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTA-GKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQV

Query:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC
        LMK                              ADAE+HCMQLRGNGLLSS+EP  GGC
Subjt:  LMKVIPGMTLDNAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCGCCCAACCACGTCTTCAACCCCAAACCAGGGGACAAAAACTGTGTGTGTAGAGGGCTATGCTCGAGCCTTGGTGC
AGCGATTGTTAAATCAGCAACAACAGCAGGAAAAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAAAAAGCCACTCCTGGAAGAGAATCCAAGTTTGATTTGAGGAGAT
CAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTAGTCCAAGTCCTGATGAAAGTTATCCCTGGAATGACGCTCGAC
AATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGACT
CTTAAGTTCAATTGAACCTGCAAGTGGTGGGTGCTGC
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTGCGATTTGCGGGAAATTAGCTCTCTCGCCCAACCACGTCTTCAACCCCAAACCAGGGGACAAAAACTGTGTGTGTAGAGGGCTATGCTCGAGCCTTGGTGC
AGCGATTGTTAAATCAGCAACAACAGCAGGAAAAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAAAAAGCCACTCCTGGAAGAGAATCCAAGTTTGATTTGAGGAGAT
CAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGATGACTTCAATAAACGAGAATACGTAGTCCAAGTCCTGATGAAAGTTATCCCTGGAATGACGCTCGAC
AATGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCACTGGTGATCATTTGTGCTCAGGCTGATGCTGAAGAACACTGCATGCAGCTCAGAGGCAATGGACT
CTTAAGTTCAATTGAACCTGCAAGTGGTGGGTGCTGC
Protein sequenceShow/hide protein sequence
MEIAICGKLALSPNHVFNPKPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEKATPGRESKFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLD
NAVNIMQEAHYNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC