; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015353 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015353
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVQ motif-containing protein 8, chloroplastic
Genome locationscaffold2:2796211..2796681
RNA-Seq ExpressionMS015353
SyntenyMS015353
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25
IPR039833 - VQ motif-containing protein 8, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013019.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-2653.75Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNC
        MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALVQRLTG +   PP+AD +  +N     NDSSSV+TEE  NC
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNC

Query:  GDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
                                  PLFTP                L NSLSPSFMEFL
Subjt:  GDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

KGN52621.2 hypothetical protein Csa_008052 [Cucumis sativus]2.1e-2669.16Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC
        MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQRLTG  PPPP   P A  S    N+N DNDSSS +T E + 
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC

Query:  GDHHHHP
         +  + P
Subjt:  GDHHHHP

XP_008466850.1 PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo]5.8e-2955.41Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
              V E QS      + +DV              T F+SP   +SLSPSFM+FL
Subjt:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

XP_022150646.1 VQ motif-containing protein 8, chloroplastic [Momordica charantia]6.3e-8499.36Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
        +HHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
Subjt:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

XP_038893302.1 VQ motif-containing protein 8, chloroplastic [Benincasa hispida]1.5e-3764.07Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLT--
        MSP KSC+INGPRPSPLLIHK SR IRK  PQLRQP+IIYTHSPKIIHTQPKDFMALVQRLTGF PPPPP   +      S+RN N   DNDSSS LT  
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADD------SDRNNNVNFDNDSSSVLT--

Query:  EEVN-CGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFL
        EE+N CGD     S V +   Q QS+S L          LRY+ D T+ F+SP L NSLSPSFMEFL
Subjt:  EEVN-CGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATS-FASPGLPNSLSPSFMEFL

TrEMBL top hitse value%identityAlignment
A0A0A0KT78 VQ domain-containing protein2.8e-2957.76Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC
        MSP KS +INGPRPSPLLIH HSRLIRK P QLRQPLIIYTHSPKIIHT PKDFMALVQRLTG  PPPP   P A  S    N+N DNDSSS +T E + 
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPP---PHADDSDRNNNVNFDNDSSSVLTEEVNC

Query:  GDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFL
         +   + S +K       SH    DV              T F+SP  L +SLSPSFM+FL
Subjt:  GDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPG-LPNSLSPSFMEFL

A0A1S3CS67 VQ motif-containing protein 8, chloroplastic-like2.8e-2955.41Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
              V E QS      + +DV              T F+SP   +SLSPSFM+FL
Subjt:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

A0A5D3CFH5 VQ motif-containing protein 82.8e-2955.41Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSP KS  ING RPSPLLIH  SRL+RK  PQLRQPLIIYTHSPKIIHT PKDFMALVQRLTGF PPPP      +RN+N   DNDS+S +T E +    
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
              V E QS      + +DV              T F+SP   +SLSPSFM+FL
Subjt:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

A0A6J1DC48 VQ motif-containing protein 8, chloroplastic3.1e-8499.36Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
        MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDH

Query:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
        +HHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL
Subjt:  HHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL

W9RYA3 VQ domain-containing protein3.7e-2140.21Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIRKP-------PPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGF-----------------------TPPPPP
        MSP K   ING RPSPL I+K S  I KP       PPQ  QP+IIYTHSP+IIHT+P++FMA+VQ LTG                        +    P
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIRKP-------PPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGF-----------------------TPPPPP

Query:  HADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTP-------AGLRYAPDATSFASPGLPNSLSPSFMEFL
           +S  +   + +N+SSSVLT+E+N G   ++          + S+  LAD+PLFTP       A  R+ PDATS  + G  + +SPSF+EF+
Subjt:  HADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTP-------AGLRYAPDATSFASPGLPNSLSPSFMEFL

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B3.2e-0642.86Show/hide
Query:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q8LGD5 Protein MKS19.0e-0942.67Show/hide
Query:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT

Q9CA36 VQ motif-containing protein 8, chloroplastic4.5e-1640.37Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT
        M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +DFMALVQRLTG         D+  R N       SSSV+T
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT

Query:  EEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP
        EEVN GD +    + ++ ++Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Subjt:  EEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP

Q9LS54 VQ motif-containing protein 203.7e-1033.11Show/hide
Query:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN
        P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG T     H+D+                          DR 
Subjt:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN

Query:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH
        NN                             ++ D++SSSV+T E N G+H
Subjt:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.3e-0742.86Show/hide
Query:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        GP+P+PL +   S ++I+KP          PPQ  Q           P+ IYT +P+IIHT P +FM LVQRLTG T
Subjt:  GPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFT

AT1G21326.1 VQ motif-containing protein7.1e-0929.44Show/hide
Query:  KSCDINGPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVN
        +S  I GPRP PL +   S ++I+KP          PPQ  Q           P+IIYT SP+IIHT P +FM LVQRLTG T         S  +++ +
Subjt:  KSCDINGPRPSPLLIHKHS-RLIRKP----------PPQLRQ-----------PLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVN

Query:  FDNDSSSV---------------LTEEVNCGD----------------HHHHPSYVKEVQSQSQSHSFLADVPLFTPAGL---------RYAPDATSFAS
           D+S++               +TE+ N  +                H+HH  + +E Q Q+Q      + P F  AG+           +PD  S   
Subjt:  FDNDSSSV---------------LTEEVNCGD----------------HHHHPSYVKEVQSQSQSHSFLADVPLFTPAGL---------RYAPDATSFAS

Query:  PGLPNSLSPSFMEF
        P  P   S  F +F
Subjt:  PGLPNSLSPSFMEF

AT1G68450.1 VQ motif-containing protein3.2e-1740.37Show/hide
Query:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT
        M P +  +ING RPS L +   S  I+       KP P  R  P+IIY HSPK+IHT+ +DFMALVQRLTG         D+  R N       SSSV+T
Subjt:  MSPAKSCDINGPRPSPLLIHKHSRLIR-------KPPPQLR-QPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLT

Query:  EEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP
        EEVN GD +    + ++ ++Q Q    L D+PLFTP+ +    +P    + SP   +S  P
Subjt:  EEVNCGDHHHHPSYVKEVQSQSQSHSFLADVPLFTPAGLRY--APDATSFASPGLPNSLSP

AT3G18360.1 VQ motif-containing protein2.6e-1133.11Show/hide
Query:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN
        P P  L ++K S +I+KPP         + R P+IIYTH+P+IIHT PKDFMALVQ+LTG T     H+D+                          DR 
Subjt:  PRPSPLLIHKHSRLIRKPP--------PQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDS-------------------------DRN

Query:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH
        NN                             ++ D++SSSV+T E N G+H
Subjt:  NN-----------------------------VNFDNDSSSVLTEEVNCGDH

AT3G18690.1 MAP kinase substrate 16.4e-1042.67Show/hide
Query:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT
        +   I GPRPSPL +HK S  I+K             PPP + R+P++IY  SPK++H    +FM +VQRLTG +
Subjt:  KSCDINGPRPSPLLIHKHSRLIRK-------------PPPQL-RQPLIIYTHSPKIIHTQPKDFMALVQRLTGFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCT
CATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACG
ACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACCACCACCACCCCTCCTACGTTAAGGAAGTC
CAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAA
TTCCTTGTCCCCCTCTTTCATGGAGTTTCTC
mRNA sequenceShow/hide mRNA sequence
ATGAGCCCAGCTAAATCCTGCGACATCAATGGCCCACGCCCATCTCCCTTGTTGATCCATAAACACTCTCGCTTGATTCGTAAGCCGCCGCCGCAGCTCCGGCAGCCGCT
CATTATTTACACCCATTCCCCCAAAATCATCCACACCCAGCCCAAGGATTTCATGGCCCTCGTCCAGCGCCTCACCGGCTTCACCCCGCCGCCGCCGCCCCACGCCGACG
ACTCCGACAGAAATAACAACGTTAATTTTGATAACGATTCTTCCTCGGTTCTAACGGAGGAGGTTAATTGTGGGGACCACCACCACCACCCCTCCTACGTTAAGGAAGTC
CAGAGTCAGAGTCAGAGCCATTCGTTTTTGGCCGACGTTCCGTTATTCACGCCGGCGGGTCTCCGATATGCGCCCGATGCGACGTCGTTTGCGTCCCCCGGCTTGCCTAA
TTCCTTGTCCCCCTCTTTCATGGAGTTTCTC
Protein sequenceShow/hide protein sequence
MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEEVNCGDHHHHPSYVKEV
QSQSQSHSFLADVPLFTPAGLRYAPDATSFASPGLPNSLSPSFMEFL