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MS015360 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015360
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCotton fiber protein
Genome locationscaffold2:2829516..2829893
RNA-Seq ExpressionMS015360
SyntenyMS015360
Gene Ontology termsNA
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034569.1 uncharacterized protein E6C27_scaffold65G005850 [Cucumis melo var. makuwa]1.8e-2050.38Show/hide
Query:  KPIIPKLLFFKKSATARH-----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRS--RRRHVYSLLFPCRSCLSSG----SFRDGNYIVEEAEEEAGQFLE
        +P+IPKLLF KKS+  ++       +Y  FV  +QFSPST TPL  ++  G R   RR  V S+LFPCR  + +       +DG+Y VEEA      F E
Subjt:  KPIIPKLLFFKKSATARH-----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRS--RRRHVYSLLFPCRSCLSSG----SFRDGNYIVEEAEEEAGQFLE

Query:  ALEWSEDEDDSIDHRAELFIQKFYADMKMEALA
        +L+WS+++DDSID RAE+FIQKFYADMKME LA
Subjt:  ALEWSEDEDDSIDHRAELFIQKFYADMKMEALA

KAE8648793.1 hypothetical protein Csa_009258 [Cucumis sativus]5.2e-2055.22Show/hide
Query:  KPIIPKLLFFKKSATAR------HPNSYYGFVHHYQFSPSTATPLIHY-HRSGRRSRRRH-VYSLLFPCRSCLSSGS-----FRDGNYIVEEAEEEAGQF
        +PIIPKLLF KKS+  +      H N  YGFV  ++FSPST TPL  + +R GRR  RR+ V S+LFPCR C+  GS       DG+Y VEEA      F
Subjt:  KPIIPKLLFFKKSATAR------HPNSYYGFVHHYQFSPSTATPLIHY-HRSGRRSRRRH-VYSLLFPCRSCLSSGS-----FRDGNYIVEEAEEEAGQF

Query:  LEALEWSEDEDDSIDHRAELFIQKFYADMKMEAL
         E+L+WS D+DDSID RAE+FIQKFY DMKME L
Subjt:  LEALEWSEDEDDSIDHRAELFIQKFYADMKMEAL

XP_004135396.1 uncharacterized protein LOC101211232 [Cucumis sativus]5.2e-2055.22Show/hide
Query:  KPIIPKLLFFKKSATAR------HPNSYYGFVHHYQFSPSTATPLIHY-HRSGRRSRRRH-VYSLLFPCRSCLSSGS-----FRDGNYIVEEAEEEAGQF
        +PIIPKLLF KKS+  +      H N  YGFV  ++FSPST TPL  + +R GRR  RR+ V S+LFPCR C+  GS       DG+Y VEEA      F
Subjt:  KPIIPKLLFFKKSATAR------HPNSYYGFVHHYQFSPSTATPLIHY-HRSGRRSRRRH-VYSLLFPCRSCLSSGS-----FRDGNYIVEEAEEEAGQF

Query:  LEALEWSEDEDDSIDHRAELFIQKFYADMKMEAL
         E+L+WS D+DDSID RAE+FIQKFY DMKME L
Subjt:  LEALEWSEDEDDSIDHRAELFIQKFYADMKMEAL

XP_022150641.1 uncharacterized protein LOC111018726 [Momordica charantia]1.2e-6499.21Show/hide
Query:  IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSEDED
        IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNY VEEAEEEAGQFLEALEWSEDED
Subjt:  IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSEDED

Query:  DSIDHRAELFIQKFYADMKMEALAMP
        DSIDHRAELFIQKFYADMKMEALAMP
Subjt:  DSIDHRAELFIQKFYADMKMEALAMP

XP_038893176.1 uncharacterized protein LOC120082033 [Benincasa hispida]2.2e-2356.49Show/hide
Query:  KPIIPKLLFFKKSATAR----HPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGS----FRDGNYIVEEAEEEAGQFLEALE
        +PIIPKLLF KKS+       H +  YGFV  +QFSPST TPL  ++R  R   RR VYS+LFPCR C+ S S      DG+Y VEEA        E+L+
Subjt:  KPIIPKLLFFKKSATAR----HPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGS----FRDGNYIVEEAEEEAGQFLEALE

Query:  WSEDEDDSIDHRAELFIQKFYADMKMEALAM
        WS D+DDSID RAE+FIQKFYADMKME LA+
Subjt:  WSEDEDDSIDHRAELFIQKFYADMKMEALAM

TrEMBL top hitse value%identityAlignment
A0A2N9FQH2 Uncharacterized protein1.9e-1548.12Show/hide
Query:  KPIIPKLLFFKKSATARH----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRR-RHVYSLLFPCRSCLSSGSFR--DGNYIVEE-------AEEEAGQ
        KPIIPKL+  KK+   +      +  YG +  YQFSPS +TPLIHYHR   ++RR R +YS+LF CR CL S S    D + IVE            AGQ
Subjt:  KPIIPKLLFFKKSATARH----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRR-RHVYSLLFPCRSCLSSGSFR--DGNYIVEE-------AEEEAGQ

Query:  FLEALEWSEDEDDSIDHRAELFIQKFYADMKME
        FLE L+   DE+DS+D RAE FIQ+FY +M+M+
Subjt:  FLEALEWSEDEDDSIDHRAELFIQKFYADMKME

A0A5A7SZQ9 Uncharacterized protein8.6e-2150.38Show/hide
Query:  KPIIPKLLFFKKSATARH-----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRS--RRRHVYSLLFPCRSCLSSG----SFRDGNYIVEEAEEEAGQFLE
        +P+IPKLLF KKS+  ++       +Y  FV  +QFSPST TPL  ++  G R   RR  V S+LFPCR  + +       +DG+Y VEEA      F E
Subjt:  KPIIPKLLFFKKSATARH-----PNSYYGFVHHYQFSPSTATPLIHYHRSGRRS--RRRHVYSLLFPCRSCLSSG----SFRDGNYIVEEAEEEAGQFLE

Query:  ALEWSEDEDDSIDHRAELFIQKFYADMKMEALA
        +L+WS+++DDSID RAE+FIQKFYADMKME LA
Subjt:  ALEWSEDEDDSIDHRAELFIQKFYADMKMEALA

A0A5N6RE49 Uncharacterized protein3.2e-1547.37Show/hide
Query:  KPIIPKLLFFKKS------ATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRR-RHVYSLLFPCRSCLSSGSFR----DGNYIVEE---AEEEAGQ
        KP+IPKL+F KK+         +H N  YGF+  YQFS S +TPLIHYH++  +SRR R +YS+ F C +CL  GS R    D +Y +E        AGQ
Subjt:  KPIIPKLLFFKKS------ATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRR-RHVYSLLFPCRSCLSSGSFR----DGNYIVEE---AEEEAGQ

Query:  FLEALEWSEDEDDSIDHRAELFIQKFYADMKME
        FLE  + S DE+DS+D RAE FI++FY +M+M+
Subjt:  FLEALEWSEDEDDSIDHRAELFIQKFYADMKME

A0A6J1DC42 uncharacterized protein LOC1110187265.7e-6599.21Show/hide
Query:  IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSEDED
        IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNY VEEAEEEAGQFLEALEWSEDED
Subjt:  IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSEDED

Query:  DSIDHRAELFIQKFYADMKMEALAMP
        DSIDHRAELFIQKFYADMKMEALAMP
Subjt:  DSIDHRAELFIQKFYADMKMEALAMP

A0A6J1HX57 uncharacterized protein LOC1114674641.9e-1552Show/hide
Query:  KPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRS-RRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSE--DE
        KPI PKLLF KKS+ A+        +  +QFSPST TPL   +R  RR  RR  VYS+LFPCR   + G   +G    E      G+  EAL+ SE  DE
Subjt:  KPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRS-RRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSE--DE

Query:  DDSIDHRAELFIQKFYADMKMEALA
        +DSID RAELFI+KFYADM+ME LA
Subjt:  DDSIDHRAELFIQKFYADMKMEALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68350.1 unknown protein2.0e-0633.09Show/hide
Query:  KPIIP--KLLFFKKSATAR---HPNSYYGFVHHYQFSPSTATPLIHYHRSGR--RSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEW
        +PIIP  KL+  K+  + R        Y F+  YQFSPS+ + +  Y +S +  RS  + +Y LLF    C+  G + + +  + ++  E   F  AL  
Subjt:  KPIIP--KLLFFKKSATAR---HPNSYYGFVHHYQFSPSTATPLIHYHRSGR--RSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEW

Query:  SE------------DEDDSIDHRAELFIQKFYADMKMEA
        +              EDDSID +AE FI+KFY +M+M+A
Subjt:  SE------------DEDDSIDHRAELFIQKFYADMKMEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGGAAAACCCATCATTCCAAAGCTCCTTTTCTTCAAGAAATCAGCGACTGCAAGGCACCCTAATTCTTATTATGGGTTTGTTCACCACTACCAATTCTCCCCCTCCAC
CGCCACTCCTCTCATTCATTATCACAGATCCGGCCGCCGCAGCCGCCGCCGCCATGTGTATTCGCTGCTGTTTCCGTGCAGATCATGCCTGAGCAGTGGCAGTTTCCGGG
ATGGAAATTACATAGTGGAGGAGGCAGAGGAAGAGGCAGGGCAGTTTTTGGAGGCGTTGGAGTGGAGCGAAGATGAAGATGATTCGATTGATCACAGGGCTGAATTGTTC
ATTCAGAAGTTCTATGCGGACATGAAAATGGAGGCCCTCGCAATGCCA
mRNA sequenceShow/hide mRNA sequence
ATTGGAAAACCCATCATTCCAAAGCTCCTTTTCTTCAAGAAATCAGCGACTGCAAGGCACCCTAATTCTTATTATGGGTTTGTTCACCACTACCAATTCTCCCCCTCCAC
CGCCACTCCTCTCATTCATTATCACAGATCCGGCCGCCGCAGCCGCCGCCGCCATGTGTATTCGCTGCTGTTTCCGTGCAGATCATGCCTGAGCAGTGGCAGTTTCCGGG
ATGGAAATTACATAGTGGAGGAGGCAGAGGAAGAGGCAGGGCAGTTTTTGGAGGCGTTGGAGTGGAGCGAAGATGAAGATGATTCGATTGATCACAGGGCTGAATTGTTC
ATTCAGAAGTTCTATGCGGACATGAAAATGGAGGCCCTCGCAATGCCA
Protein sequenceShow/hide protein sequence
IGKPIIPKLLFFKKSATARHPNSYYGFVHHYQFSPSTATPLIHYHRSGRRSRRRHVYSLLFPCRSCLSSGSFRDGNYIVEEAEEEAGQFLEALEWSEDEDDSIDHRAELF
IQKFYADMKMEALAMP