; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015371 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015371
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionocticosapeptide/Phox/Bem1p (PB1) domain-containing protein
Genome locationscaffold2:2933930..2934253
RNA-Seq ExpressionMS015371
SyntenyMS015371
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032060.1 hypothetical protein SDJN02_06103, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-5399.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

XP_004135079.1 RNA polymerase II degradation factor 1 [Cucumis sativus]2.3e-5399.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

XP_008446641.1 PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo]1.8e-5399.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

XP_022956699.1 putative uncharacterized protein DDB_G0271606 isoform X1 [Cucurbita moschata]2.0e-5298.15Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

XP_038892018.1 putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispida]2.3e-5399.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

TrEMBL top hitse value%identityAlignment
A0A0A0KWH3 PB1 domain-containing protein1.1e-5399.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

A0A1S3BF26 RNA polymerase II degradation factor 18.6e-5499.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

A0A5A7SVC4 RNA polymerase II degradation factor 18.6e-5499.07Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

A0A6J1GYH7 PB1 domain-containing protein9.5e-5398.15Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

A0A6J1HQW4 RNA polymerase II degradation factor 1-like9.5e-5398.15Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein9.8e-4276.85Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        +LR MCSYGGHI+PRPHDK+LCY+ G+TRIVVVDR++SL  L ARLS TLL+GR FTLKYQLP+EDLDSLISVTTDEDL+NMI+EYDRT S S+  + KP
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
        SRLRLFLF
Subjt:  SRLRLFLF

AT3G18230.1 Octicosapeptide/Phox/Bem1p family protein5.0e-3871.3Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP
        +LRLMCS+GGHI+PRPHDK+L Y  GETRIVVVDR  SLS L +RLS  LLNGR FTLKYQLP+EDLDSL+++TTDEDLENMI+EYDR AS+++      
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKP

Query:  SRLRLFLF
         RLRLFLF
Subjt:  SRLRLFLF

AT4G05150.1 Octicosapeptide/Phox/Bem1p family protein1.9e-2960.55Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRP-FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAK
        R+R MC++GG I+PRP D  LCYV G+ R+V V RHT+ + L ++L+K  L+G+   ++KYQLPNEDLD+LISV+TDED+ENM+DEYDR A N  NP A 
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRP-FTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAK

Query:  PSRLRLFLF
         SRLRLFLF
Subjt:  PSRLRLFLF

AT5G09620.1 Octicosapeptide/Phox/Bem1p family protein2.4e-2453.15Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLL---NGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPT
        +++LMCSYGG I PRPHD  L YV G+T+I+ VDR      L ++LS       +G   + KYQLP EDLD+LISVT DEDLE+M+ EYDR    S+   
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLL---NGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPT

Query:  AKPSRLRLFLF
         KP+R+RLFLF
Subjt:  AKPSRLRLFLF

AT5G64430.1 Octicosapeptide/Phox/Bem1p family protein5.4e-2453.57Show/hide
Query:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTL----LNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP
        +++ MCSYGG I PRPHD  L YV GET+I+ VDR      L ++LS         G   T KYQLP EDLD+LISVT D+DLE+M+ EYDR    SS  
Subjt:  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTL----LNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP

Query:  TAKPSRLRLFLF
          KP+R+RLFLF
Subjt:  TAKPSRLRLFLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATAC
GTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATACCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCA
CCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTC
mRNA sequenceShow/hide mRNA sequence
CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATAC
GTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATACCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCA
CCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTC
Protein sequenceShow/hide protein sequence
RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLF