CuGenDBv2

Gene ID	MS015373
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
Genome location	scaffold2:2958772..2959155
RNA-Seq Expression	MS015373
Synteny	MS015373
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR000270 - PB1 domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135079.1 RNA polymerase II degradation factor 1 [Cucumis sativus]

1.2e-37

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPP    Q + PA+S HLNYP+S+DSSP + NTD+WDE LA    A RLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

XP_008446641.1 PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo]

4.1e-41

67.59

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPPP P Q++PPA+S HLNYP+S+DSSP + NTD+WDE LA    A RLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

XP_022968040.1 uncharacterized protein LOC111467403 [Cucurbita maxima]

2.1e-37

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEP PP P Q +P A++ HLNYP+SVDSSP + N D+WDE LA AA A RLR MCSYG         +TLCYV GETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

XP_023541650.1 uncharacterized protein LOC111801745 [Cucurbita pepo subsp. pepo]

2.1e-37

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEP PP P Q +P A++ HLNYP+SVDSSP + N D+WDE LA AA A RLR MCSYG         +TLCYV GETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

XP_038892018.1 putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispida]

6.9e-41

67.59

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPPP P Q +PP +S HLNYP+S+DSSP + NTD+WDE LA    AGRLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWH3 PB1 domain-containing protein

5.9e-38

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPP    Q + PA+S HLNYP+S+DSSP + NTD+WDE LA    A RLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

A0A1S3BF26 RNA polymerase II degradation factor 1

2.0e-41

67.59

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPPP P Q++PPA+S HLNYP+S+DSSP + NTD+WDE LA    A RLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

A0A5A7SVC4 RNA polymerase II degradation factor 1

2.0e-41

67.59

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEPPPP P Q++PPA+S HLNYP+S+DSSP + NTD+WDE LA    A RLRLMCSYG         +TLCYVCGETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

A0A6J1FZM0 negative elongation factor A-like

1.0e-37

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEP PP P Q +P A++ HLNYP+SVDSSP + N D+WDE LA AA A RLR MCSYG         +TLCYV GETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

A0A6J1HW25 uncharacterized protein LOC111467403

1.0e-37

65.52

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Query:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL
        +TEP PP P Q +P A++ HLNYP+SVDSSP + N D+WDE LA AA A RLR MCSYG         +TLCYV GETRIVVVD HTSLSDLTARLSKTL
Subjt:  LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMT-NTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTL

Query:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN
        LNGRP           LDSLISV TDEDLENMIDEYDR     SN
Subjt:  LNGRPL----------LDSLISVATDEDLENMIDEYDRPILKRSN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G25300.1 Octicosapeptide/Phox/Bem1p family protein

2.6e-09

40.86

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Query:  RLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNGRPL----------LDSLISVATDEDLENMIDEYDRPILKR
        +L L+CSYG         ++L Y+ GETR+V+V    S  D    LS  LL+GR             DSLI+V+ +EDL+NMI EYD   L+R
Subjt:  RLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNGRPL----------LDSLISVATDEDLENMIDEYDRPILKR

AT2G01190.1 Octicosapeptide/Phox/Bem1p family protein

1.5e-22

44.44

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Query:  EPPPPSPAQS-------------VPPAISHHL--NYPDSVDSSPMT-NTDSWDEHLAAAANAG---------RLRLMCSYG--------RQTLCYVCGET
        EPPP S + +             VPP +  H+  +YP+S+DSSP +  TD WD+  A +   G         +LR MCSYG         ++LCY+ G+T
Subjt:  EPPPPSPAQS-------------VPPAISHHL--NYPDSVDSSPMT-NTDSWDEHLAAAANAG---------RLRLMCSYG--------RQTLCYVCGET

Query:  RIVVVDHHTSLSDLTARLSKTLLNGRPL----------LDSLISVATDEDLENMIDEYDRPI
        RIVVVD ++SL  L ARLS TLL+GR            LDSLISV TDEDL+NMI+EYDR I
Subjt:  RIVVVDHHTSLSDLTARLSKTLLNGRPL----------LDSLISVATDEDLENMIDEYDRPI

AT3G18230.1 Octicosapeptide/Phox/Bem1p family protein

4.4e-17

45.26

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Query:  PPPPSPAQSVPPAISHHLNYPDSVDSSP---MTNTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTLL
        P P +   S  PA    +     +D SP    T+T    E LAA   A +LRLMCS+G         ++L Y  GETRIVVVD   SLS L +RLS  LL
Subjt:  PPPPSPAQSVPPAISHHLNYPDSVDSSP---MTNTDSWDEHLAAAANAGRLRLMCSYG--------RQTLCYVCGETRIVVVDHHTSLSDLTARLSKTLL

Query:  NGRPL----------LDSLISVATDEDLENMIDEYDR
        NGR            LDSL+++ TDEDLENMI+EYDR
Subjt:  NGRPL----------LDSLISVATDEDLENMIDEYDR

AT4G05150.1 Octicosapeptide/Phox/Bem1p family protein

1.2e-11

39.47

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Query:  DSVDSSPMTNTDSWDEHLAAAANAGRLRLMCSYGRQ--------TLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNGRPL-----------LDSLISVA
        DS+ SSP +  DS            R+R MC++G +         LCYV G+ R+V V  HT+ + L ++L+K  L+G+             LD+LISV+
Subjt:  DSVDSSPMTNTDSWDEHLAAAANAGRLRLMCSYGRQ--------TLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNGRPL-----------LDSLISVA

Query:  TDEDLENMIDEYDR
        TDED+ENM+DEYDR
Subjt:  TDEDLENMIDEYDR

AT5G09620.1 Octicosapeptide/Phox/Bem1p family protein

1.3e-08

34.4

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Query:  NYPDSVDSSPMT------NTDSWDEHLAAAANAGRLRLMCSYGRQ--------TLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNG-------------
        +YPDS +SSP +      N   W++         +++LMCSYG +         L YV G+T+I+ VD       L ++LS     G             
Subjt:  NYPDSVDSSPMT------NTDSWDEHLAAAANAGRLRLMCSYGRQ--------TLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNG-------------

Query:  RPLLDSLISVATDEDLENMIDEYDR
           LD+LISV  DEDLE+M+ EYDR
Subjt:  RPLLDSLISVATDEDLENMIDEYDR

Sequences

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CDS sequence

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TTGACGGAACCGCCTCCGCCGTCGCCCGCTCAGTCCGTTCCGCCGGCGATCTCGCATCATCTGAATTATCCGGACTCCGTGGACTCCTCTCCGATGACTAACACCGATTC
CTGGGACGAACACCTCGCTGCAGCCGCCAACGCTGGCCGGCTCCGTCTAATGTGCAGCTACGGCCGACAAACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTG
TGGACCACCATACGTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGCCGTCCGTTATTGGATTCTCTCATTTCCGTTGCCACCGATGAGGATTTG
GAGAATATGATTGATGAGTATGATCGGCCAATTCTCAAGCGCTCGAAT

mRNA sequence

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Protein sequence

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LTEPPPPSPAQSVPPAISHHLNYPDSVDSSPMTNTDSWDEHLAAAANAGRLRLMCSYGRQTLCYVCGETRIVVVDHHTSLSDLTARLSKTLLNGRPLLDSLISVATDEDL
ENMIDEYDRPILKRSN

MS015373 (gene) of Bitter gourd (TR) v1 genome