CuGenDBv2

Gene ID	MS015376
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Rad60-SLD domain-containing protein
Genome location	scaffold2:2973229..2975370
RNA-Seq Expression	MS015376
Synteny	MS015376
Gene Ontology terms	GO:0009451 - RNA modification (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003723 - RNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR022617 - Rad60/SUMO-like domain IPR029071 - Ubiquitin-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KGN52648.2 hypothetical protein Csa_008468 [Cucumis sativus]

9.9e-83

76.58

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQEL
        ADSAEEFEPLFDYSRVQP +VVCLD  D+D SPAPF+KRAKI NPA TSSVNGNPK+KQV +E ++EDWLPPPPKV VDA++   EDSTLK LRLKKQEL
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQEL

Query:  ASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISP
        ASVALSA+NLLR VEESAKVDVGNT+   ++ DLD QTPVASKER KIVISV+D+ KEE KQYRLF+D+K  RLFKLYA+ LK+DP+SLVF FDGDK+ P
Subjt:  ASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISP

Query:  EDTPAGLGMEDDDMIEVNVKPS
        +DTP GLGMEDDDMIEVN+K S
Subjt:  EDTPAGLGMEDDDMIEVNVKPS

XP_004135076.1 uncharacterized protein LOC101214853 [Cucumis sativus]

1.8e-84

77.23

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQP +VVCLDDEDSD   SPAPF+KRAKI NPA TSSVNGNPK+KQV +E ++EDWLPPPPKV VDA++   EDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGNT+   ++ DLD QTPVASKER KIVISV+D+ KEE KQYRLF+D+K  RLFKLYA+ LK+DP+SLVF FDGDK+
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P+DTP GLGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

XP_008446647.1 PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo]

2.0e-83

76.34

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQP +VVCLDDEDSD   SPAPF+KRAKI+N A TSSVNGNPK+KQV +E  +EDWLPPPPKV VD  +  GEDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGNT+  S++ DLD QTPV SKER KIVISV+D+ KEE KQYRLF+D+   RLFK+YA+ LK+DP+SLVF FDGDKI
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P DTP GLGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

XP_022150476.1 uncharacterized protein LOC111018613 [Momordica charantia]

2.3e-116

100

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA
        ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA

Query:  SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE
        SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE
Subjt:  SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE

Query:  DTPAGLGMEDDDMIEVNVKPS
        DTPAGLGMEDDDMIEVNVKPS
Subjt:  DTPAGLGMEDDDMIEVNVKPS

XP_038891511.1 uncharacterized protein LOC120080907 [Benincasa hispida]

5.8e-83

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQPR+VVCLDDEDSD   SPAPFSKR KI NPA TS V+ NPK+KQV +E ++EDWLPPPPKV VDA++MCGEDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGN  P S++ DLD QTP+ASKER KIVISV+D+ KEE KQ+RLF+D+K  RLFK+YA+  K+DP++L+F FDGDK+
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P+DTP  LGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWH7 Rad60-SLD domain-containing protein

8.7e-85

77.23

Show/hide

Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQP +VVCLDDEDSD   SPAPF+KRAKI NPA TSSVNGNPK+KQV +E ++EDWLPPPPKV VDA++   EDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGNT+   ++ DLD QTPVASKER KIVISV+D+ KEE KQYRLF+D+K  RLFKLYA+ LK+DP+SLVF FDGDK+
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P+DTP GLGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

A0A1S3BF31 uncharacterized protein LOC103489317 isoform X1

9.6e-84

76.34

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQP +VVCLDDEDSD   SPAPF+KRAKI+N A TSSVNGNPK+KQV +E  +EDWLPPPPKV VD  +  GEDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGNT+  S++ DLD QTPV SKER KIVISV+D+ KEE KQYRLF+D+   RLFK+YA+ LK+DP+SLVF FDGDKI
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P DTP GLGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

A0A5A7SVU4 Putative Ubiquitin-like superfamily protein

9.6e-84

76.34

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        ADSAEEFEPLFDYSRVQP +VVCLDDEDSD   SPAPF+KRAKI+N A TSSVNGNPK+KQV +E  +EDWLPPPPKV VD  +  GEDSTLK LRLKKQ
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAKVDVGNT+  S++ DLD QTPV SKER KIVISV+D+ KEE KQYRLF+D+   RLFK+YA+ LK+DP+SLVF FDGDKI
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
         P DTP GLGMEDDDMIEVN+K S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

A0A6J1DBL7 uncharacterized protein LOC111018613

1.1e-116

100

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA
        ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELA

Query:  SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE
        SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE
Subjt:  SVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPE

Query:  DTPAGLGMEDDDMIEVNVKPS
        DTPAGLGMEDDDMIEVNVKPS
Subjt:  DTPAGLGMEDDDMIEVNVKPS

A0A6J1H158 uncharacterized protein LOC111458628

2.6e-81

74.11

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Query:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ
        AD AEEFEPLFDYSRVQPR+V CLDDEDSD   SP PFSKR++I NPA TS V+G  KDKQV +E E+EDWLPPPPKVSVDAK+MCGEDSTLK LRL K 
Subjt:  ADSAEEFEPLFDYSRVQPRTVVCLDDEDSDT--SPAPFSKRAKISNPADTSSVNGNPKDKQV-VEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQ

Query:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI
        ELASVALSA+NLLR VEESAK+DVGNT    ++  LDDQ P+ASKER KIVISV+D+ KEE KQ+RLFMD+K  RLFK+YAE  K+DP+SLVF FDGDK+
Subjt:  ELASVALSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKI

Query:  SPEDTPAGLGMEDDDMIEVNVKPS
        SP+DTP GLGMEDDDMI+VN++ S
Subjt:  SPEDTPAGLGMEDDDMIEVNVKPS

SwissProt top hits

e value

%identity

Alignment

O09130 NFATC2-interacting protein

7.3e-04

35.06

Show/hide

Query:  ASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV
        A++   ++ + VQ   K +  +  L  D  L  L   Y E + L    L F FDG K+S ++ PA LG+E  D+IEV
Subjt:  ASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV

P55853 Small ubiquitin-related modifier

5.6e-04

39.44

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Query:  KIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV
        KI +  QD+ +     +R+     + +L K YA+   +   SL F FDG +I+ +DTP  L MEDDD+IEV
Subjt:  KIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV

Q8NCF5 NFATC2-interacting protein

2.9e-05

34.09

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Query:  VDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV
        +D  +   +P A++   ++ + VQ   K +  +  L  D  L  L   Y E + L  + L F FDG K+S  + PA LGME  D+IEV
Subjt:  VDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV

Q9GLZ9 NFATC2-interacting protein

2.3e-05

36.25

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Query:  TPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV
        +P A++   ++ + VQ   K +  +  L  D  L  L   Y E + L  + L F FDG K+S  + PA LGME  D+IEV
Subjt:  TPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEV

Arabidopsis top hits

e value

%identity

Alignment

AT1G68185.1 Ubiquitin-like superfamily protein

3.7e-43

48.85

Show/hide

Query:  EEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIE-DEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELASVA
        E+ EPLFDY RVQP   VC+DD+D D S  P  K+AK S      +V     D +V+E+  D+DWL PPPKV  D      EDST+KALR KK EL S  
Subjt:  EEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIE-DEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELASVA

Query:  LSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTP-VASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDT
         +  ++++ VEESAK +V  +   S +     Q P   + +R KIVI++QD  K+  K  R+F DEK  R+ KLY +  KLDPQ+LVF FDGDKI P  T
Subjt:  LSAENLLRAVEESAKVDVGNTAPASVDLDLDDQTP-VASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDT

Query:  PAGLGMEDDDMIEVNVK
        P+ LGMED DMIEV+ K
Subjt:  PAGLGMEDDDMIEVNVK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CAGGCGGATTCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCGCACGGTTGTTTGTCTCGACGACGAGGATTCAGACACGTCTCCAGCACCTTT
TTCCAAGCGAGCTAAGATTTCAAATCCGGCGGACACGAGTTCGGTGAATGGTAACCCAAAGGACAAACAAGTTGTGGAAATTGAAGATGAAGATTGGCTACCTCCTCCTC
CGAAGGTATCTGTTGATGCAAAAGATATGTGTGGCGAAGATTCCACATTGAAGGCGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCAGTTGCACTATCAGCTGAAAACTTG
TTGCGAGCCGTGGAGGAGTCTGCAAAAGTGGATGTTGGAAACACGGCCCCGGCTTCCGTGGATCTTGATTTAGATGACCAAACTCCAGTTGCTTCTAAAGAAAGACCCAA
GATTGTTATTTCTGTACAAGACAATGGCAAGGAAGAGCCCAAACAGTATCGCCTGTTTATGGATGAGAAGCTGGGGCGGCTTTTCAAATTGTATGCAGAAATACTCAAAC
TCGACCCTCAGAGTTTGGTTTTCACTTTTGATGGGGATAAAATCAGCCCAGAAGATACCCCAGCTGGCCTTGGCATGGAAGACGACGATATGATCGAAGTGAACGTCAAG
CCGAGT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

QADSAEEFEPLFDYSRVQPRTVVCLDDEDSDTSPAPFSKRAKISNPADTSSVNGNPKDKQVVEIEDEDWLPPPPKVSVDAKDMCGEDSTLKALRLKKQELASVALSAENL
LRAVEESAKVDVGNTAPASVDLDLDDQTPVASKERPKIVISVQDNGKEEPKQYRLFMDEKLGRLFKLYAEILKLDPQSLVFTFDGDKISPEDTPAGLGMEDDDMIEVNVK
PS

MS015376 (gene) of Bitter gourd (TR) v1 genome