; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015395 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015395
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transport factor 2
Genome locationscaffold586:22309..23996
RNA-Seq ExpressionMS015395
SyntenyMS015395
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN53044.1 hypothetical protein Csa_014783 [Cucumis sativus]1.2e-6478.92Show/hide
Query:  LEPSANAVVSI-FSVKLSVVLKQGGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPF
        LEPSANAVVSI FS K  VV K GG   +S+ S    +  +  MDPDAVAKAFV+HYYSTFDANR  L NLYQDNSMLTFEGQKIQG+ NIVAKL+ LPF
Subjt:  LEPSANAVVSI-FSVKLSVVLKQGGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPF

Query:  QQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA
        QQC+HSV+TVDCQPSGP GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFV NDIFRLNYA
Subjt:  QQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA

THG11672.1 hypothetical protein TEA_005919 [Camellia sinensis var. sinensis]1.4e-6083.22Show/hide
Query:  GGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLV
        GGGE ++           A MDPDAVAKAFVEHYYSTFDANR GLANLYQ++SMLTFEGQKIQG+QNIVAKLT LPFQQCQHS+TTVDCQPSGP GG+LV
Subjt:  GGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLV

Query:  FVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA
        FVSGNLQLAGEQHALKFSQMFHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA

XP_022145223.1 nuclear transport factor 2 [Momordica charantia]4.6e-64100Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSFFVLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

XP_022932693.1 nuclear transport factor 2B-like [Cucurbita moschata]8.1e-6194.31Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR+GLANLYQDNSMLTFEGQKIQG+QNIVAKLT LPFQQCQHSV+TVDCQPSGP+GGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

XP_022972136.1 nuclear transport factor 2B-like [Cucurbita maxima]1.8e-6094.31Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GLANLYQDNSMLTFEGQKIQG+QNIVAKLT LPFQQCQHSV+TVDCQPSGP+GGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

TrEMBL top hitse value%identityAlignment
A0A0A0KW20 NTF2 domain-containing protein5.8e-6578.92Show/hide
Query:  LEPSANAVVSI-FSVKLSVVLKQGGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPF
        LEPSANAVVSI FS K  VV K GG   +S+ S    +  +  MDPDAVAKAFV+HYYSTFDANR  L NLYQDNSMLTFEGQKIQG+ NIVAKL+ LPF
Subjt:  LEPSANAVVSI-FSVKLSVVLKQGGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPF

Query:  QQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA
        QQC+HSV+TVDCQPSGP GG+LVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFV NDIFRLNYA
Subjt:  QQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA

A0A4S4E6M5 NTF2 domain-containing protein6.7e-6183.22Show/hide
Query:  GGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLV
        GGGE ++           A MDPDAVAKAFVEHYYSTFDANR GLANLYQ++SMLTFEGQKIQG+QNIVAKLT LPFQQCQHS+TTVDCQPSGP GG+LV
Subjt:  GGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLV

Query:  FVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA
        FVSGNLQLAGEQHALKFSQMFHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA

A0A6J1CVD4 nuclear transport factor 22.2e-64100Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSFFVLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

A0A6J1F2G7 nuclear transport factor 2B-like3.9e-6194.31Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR+GLANLYQDNSMLTFEGQKIQG+QNIVAKLT LPFQQCQHSV+TVDCQPSGP+GGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

A0A6J1I548 nuclear transport factor 2B-like8.7e-6194.31Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GLANLYQDNSMLTFEGQKIQG+QNIVAKLT LPFQQCQHSV+TVDCQPSGP+GGVLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+VLNDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

SwissProt top hitse value%identityAlignment
Q75AA5 Nuclear transport factor 21.1e-3356.1Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MD  A+A+ F E YY+ FD +R+ L NLY+D SMLTFE  ++QGA++IV KL  LPFQ+ QH +TT+D QP+ PNG VLV ++G+L +  EQ+A +FSQ+
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMP    S++V NDIFRLNY+
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

Q96VN3 Nuclear transport factor 22.2e-3255.37Show/hide
Query:  DPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMF
        D  ++A+ FV  YY TFD NR GLA LY+D+SMLTFE   IQG   I+ KLT LPFQ+ QH V+T+D QPSG +GG+LV V+G L +  E++ + ++Q F
Subjt:  DPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMF

Query:  HLMPTPQGSFFVLNDIFRLNY
         LMP   GS+FVLND+FRL Y
Subjt:  HLMPTPQGSFFVLNDIFRLNY

Q9C7F5 Nuclear transport factor 2B5.6e-5784.55Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFVEHYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLT LPFQQC+H ++TVDCQPSGP  G+LVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+V NDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

Q9FZK4 Nuclear transport factor 2A1.1e-5584.55Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVEHYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLTGLPFQQC+H++TTVDCQPSGP GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHL+ + QG+++V NDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

Q9XJ54 Nuclear transport factor 24.3e-4166.39Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MD DAVAKAFVEHYY TFD NR  L +LYQD SMLTFEGQ+  GA  I  KL  LPF QC H + TVDCQPSGP GG+LVFVSG+L+   ++H LKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNY
        F L+P   G+F+V ND+FRLNY
Subjt:  FHLMPTPQGSFFVLNDIFRLNY

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like4.0e-2656.31Show/hide
Query:  DAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPS---GPNGGVLVFVSGNLQLAGEQHALKFSQM
        + VA AFV HYY  FD +R+ L++LY   S+LTFEGQ I G  NI  KL  LPF QC H ++TVD QPS   G  GG+LVFVSG++QL GE H L+FSQ+
Subjt:  DAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPS---GPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHL
        + L
Subjt:  FHL

AT1G11570.2 NTF2-like7.3e-3659.84Show/hide
Query:  DAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPS---GPNGGVLVFVSGNLQLAGEQHALKFSQM
        + VA AFV HYY  FD +R+ L++LY   S+LTFEGQ I G  NI  KL  LPF QC H ++TVD QPS   G  GG+LVFVSG++QL GE H L+FSQ 
Subjt:  DAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPS---GPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNY
        FHL+P  QGSFFV N++FRLNY
Subjt:  FHLMPTPQGSFFVLNDIFRLNY

AT1G27310.1 nuclear transport factor 2A7.5e-5784.55Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVEHYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLTGLPFQQC+H++TTVDCQPSGP GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHL+ + QG+++V NDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

AT1G27970.1 nuclear transport factor 2B4.0e-5884.55Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFVEHYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLT LPFQQC+H ++TVDCQPSGP  G+LVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIFRLNYA
        FHLMPTPQGSF+V NDIFRLNYA
Subjt:  FHLMPTPQGSFFVLNDIFRLNYA

AT1G27970.2 nuclear transport factor 2B5.4e-5583.9Show/hide
Query:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFVEHYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLT LPFQQC+H ++TVDCQPSGP  G+LVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSVTTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFFVLNDIF
        FHLMPTPQGSF+V NDIF
Subjt:  FHLMPTPQGSFFVLNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCTCAAAGTTTCTGGAACCCTCGGCCAACGCTGTCGTCTCCATTTTCTCTGTAAAACTCAGCGTTGTTCTCAAGCAGGGCGGAGGAGAGCGAATCTCTGTAATCTCTTT
CCCGGCGGTGGATTCGAAGATTGCGGTAATGGATCCCGACGCGGTGGCGAAGGCATTCGTTGAACATTATTACTCCACCTTCGACGCCAATCGAACCGGTCTTGCGAATC
TCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATCGTCGCCAAGCTCACTGGCCTCCCCTTCCAGCAGTGCCAGCACTCCGTT
ACCACCGTCGATTGCCAGCCTTCCGGCCCCAACGGCGGCGTGCTCGTCTTCGTCAGCGGCAATCTTCAGCTTGCTGGAGAGCAACATGCGCTCAAATTCAGTCAGATGTT
CCATTTGATGCCAACCCCACAGGGAAGCTTCTTTGTGCTGAATGACATTTTCCGATTGAACTATGCT
mRNA sequenceShow/hide mRNA sequence
CCCTCAAAGTTTCTGGAACCCTCGGCCAACGCTGTCGTCTCCATTTTCTCTGTAAAACTCAGCGTTGTTCTCAAGCAGGGCGGAGGAGAGCGAATCTCTGTAATCTCTTT
CCCGGCGGTGGATTCGAAGATTGCGGTAATGGATCCCGACGCGGTGGCGAAGGCATTCGTTGAACATTATTACTCCACCTTCGACGCCAATCGAACCGGTCTTGCGAATC
TCTACCAGGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATCGTCGCCAAGCTCACTGGCCTCCCCTTCCAGCAGTGCCAGCACTCCGTT
ACCACCGTCGATTGCCAGCCTTCCGGCCCCAACGGCGGCGTGCTCGTCTTCGTCAGCGGCAATCTTCAGCTTGCTGGAGAGCAACATGCGCTCAAATTCAGTCAGATGTT
CCATTTGATGCCAACCCCACAGGGAAGCTTCTTTGTGCTGAATGACATTTTCCGATTGAACTATGCT
Protein sequenceShow/hide protein sequence
PSKFLEPSANAVVSIFSVKLSVVLKQGGGERISVISFPAVDSKIAVMDPDAVAKAFVEHYYSTFDANRTGLANLYQDNSMLTFEGQKIQGAQNIVAKLTGLPFQQCQHSV
TTVDCQPSGPNGGVLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFFVLNDIFRLNYA