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MS015401 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015401
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold586:90188..90409
RNA-Seq ExpressionMS015401
SyntenyMS015401
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5477665.1 hypothetical protein F2P56_004284, partial [Juglans regia]1.6e-1348.65Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        I++GN++G F+ V+ +E+G  WG  L+IRV +DITK L RG+ IN+DG     W+  +YE LP  C+ CGVI H
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.1e-2164.38Show/hide
Query:  RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        RLGNAIG F DV  N   F WG+ L++RV  D+ KPL RGI +N+DGPMGGCWIPIQYE LPDF Y CG + H
Subjt:  RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.7e-3493.24Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        IRLGNAIGNFVDV CNEKGFSWGASL+IRV IDITKPLRRGI INIDGPMGGCWIPIQYE LPDFCYFCGVIGH
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.6e-2161.97Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGV
        IRLGNA+G F +  C++    WG++L++RV +DI+KPLRRGI +N+DGP+GG WIPIQYE LPDFCY CG+
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGV

XP_028117212.1 uncharacterized protein LOC114314884 [Camellia sinensis]9.4e-1447.3Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        + LGN +G FVD+   + G +WG +L IR+ I+I KPLRRG+ + + G     WI +QYE LP+FC+ CG++GH
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054811.0e-2164.38Show/hide
Query:  RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        RLGNAIG F DV  N   F WG+ L++RV  D+ KPL RGI +N+DGPMGGCWIPIQYE LPDF Y CG + H
Subjt:  RLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

A0A6J1DU55 uncharacterized protein LOC1110231358.0e-3593.24Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        IRLGNAIGNFVDV CNEKGFSWGASL+IRV IDITKPLRRGI INIDGPMGGCWIPIQYE LPDFCYFCGVIGH
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

A0A6J1DX30 uncharacterized protein LOC1110248741.7e-2161.97Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGV
        IRLGNA+G F +  C++    WG++L++RV +DI+KPLRRGI +N+DGP+GG WIPIQYE LPDFCY CG+
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGV

A0A803Q6Y1 Uncharacterized protein1.5e-1247.22Show/hide
Query:  LGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        LGN IG F++V+ +     WG  L+IRV ID+TKPLRRG NI +       W+  +YE LP++C  CG +GH
Subjt:  LGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

A0A803QFF2 Uncharacterized protein1.7e-1347.3Show/hide
Query:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH
        + LGN IG F++VY +     WG  L+IRV+ID+TKPLRRG NI +       W+  +YE LP++C  CG +GH
Subjt:  IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCGTCTAGGGAATGCGATTGGAAACTTTGTGGATGTTTATTGCAATGAGAAAGGATTTAGTTGGGGTGCGAGCCTGCAAATTAGGGTGTCGATTGACATAACCAAACC
TCTGAGAAGAGGAATTAATATTAACATTGATGGTCCAATGGGAGGATGTTGGATTCCGATCCAATATGAATGCTTGCCCGACTTTTGCTATTTTTGTGGTGTGATAGGTC
AT
mRNA sequenceShow/hide mRNA sequence
ATCCGTCTAGGGAATGCGATTGGAAACTTTGTGGATGTTTATTGCAATGAGAAAGGATTTAGTTGGGGTGCGAGCCTGCAAATTAGGGTGTCGATTGACATAACCAAACC
TCTGAGAAGAGGAATTAATATTAACATTGATGGTCCAATGGGAGGATGTTGGATTCCGATCCAATATGAATGCTTGCCCGACTTTTGCTATTTTTGTGGTGTGATAGGTC
AT
Protein sequenceShow/hide protein sequence
IRLGNAIGNFVDVYCNEKGFSWGASLQIRVSIDITKPLRRGININIDGPMGGCWIPIQYECLPDFCYFCGVIGH