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MS015416 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015416
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold586:197109..197519
RNA-Seq ExpressionMS015416
SyntenyMS015416
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.4e-1547.31Show/hide
Query:  PPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLT
        PP + W LN DASWS   ++GG+GW+L +  G I+LAGN  +      I ALE M +++GL+ IN     PI +ESDS EV+ L++ ED DLT
Subjt:  PPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1739.71Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVV
        PP  ++W LN +A+W A    GG+GW+LR+ +G +I A  + +     +I  LE MA+ +GLRAI      PI +ESDS E + LL  +  D TEI W++
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVV

Query:  NEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES
         EI        +     + R AN  AH LARRA E+
Subjt:  NEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.3e-1333.83Show/hide
Query:  PLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNE
        P + W LN DA+W A   +GGLGW++RN +  I  AG +++      I  LE MA+  G+ A+    +  + +ES+S E + L++G   ++TEI W+V +
Subjt:  PLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNE

Query:  IRYWQDSGGVCDFVKVDRIANYCAHHLARRASE
        I+ + +   +  F  V R  N  A  +A RA++
Subjt:  IRYWQDSGGVCDFVKVDRIANYCAHHLARRASE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.1e-2850.72Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYL-VTFPIRVESDSAEVVSLLRGEDTDLTEIFWV
        PPP+H W LN DASWS     GG+GW++R+W+G I+LAGN+ V+   +++K LEA A+L+GLR +  L V  P+ +E+DSAEV SLL  +  DLT+  WV
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYL-VTFPIRVESDSAEVVSLLRGEDTDLTEIFWV

Query:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASESR
        V EI   +DS  +  F KV R  N CAH LA+RAS  R
Subjt:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASESR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.8e-1638.19Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIR--------VESDSAEVVSLLRGEDTD
        PP  ++W LN DA+W A    GG+GW+LR+ +G +I A  + +     +I  LE MA+ +GLRAI      PI+        +ESDS E + LL  +  D
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIR--------VESDSAEVVSLLRGEDTD

Query:  LTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES
         TEI W++ EI    +   +     + R AN  AH LARRA E+
Subjt:  LTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.4e-1839.71Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVV
        PP  ++W LN +A+W A    GG+GW+LR+ +G +I A  + +     +I  LE MA+ +GLRAI      PI +ESDS E + LL  +  D TEI W++
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVV

Query:  NEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES
         EI        +     + R AN  AH LARRA E+
Subjt:  NEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES

A0A6J1CQG0 uncharacterized protein LOC1110132161.2e-1547.31Show/hide
Query:  PPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLT
        PP + W LN DASWS   ++GG+GW+L +  G I+LAGN  +      I ALE M +++GL+ IN     PI +ESDS EV+ L++ ED DLT
Subjt:  PPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLT

A0A6J1D5W1 uncharacterized protein LOC1110173296.5e-1433.83Show/hide
Query:  PLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNE
        P + W LN DA+W A   +GGLGW++RN +  I  AG +++      I  LE MA+  G+ A+    +  + +ES+S E + L++G   ++TEI W+V +
Subjt:  PLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNE

Query:  IRYWQDSGGVCDFVKVDRIANYCAHHLARRASE
        I+ + +   +  F  V R  N  A  +A RA++
Subjt:  IRYWQDSGGVCDFVKVDRIANYCAHHLARRASE

A0A6J1DNV9 uncharacterized protein LOC1110224035.5e-2950.72Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYL-VTFPIRVESDSAEVVSLLRGEDTDLTEIFWV
        PPP+H W LN DASWS     GG+GW++R+W+G I+LAGN+ V+   +++K LEA A+L+GLR +  L V  P+ +E+DSAEV SLL  +  DLT+  WV
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYL-VTFPIRVESDSAEVVSLLRGEDTDLTEIFWV

Query:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASESR
        V EI   +DS  +  F KV R  N CAH LA+RAS  R
Subjt:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASESR

A0A6J1DSV1 uncharacterized protein LOC1110236081.8e-1638.19Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIR--------VESDSAEVVSLLRGEDTD
        PP  ++W LN DA+W A    GG+GW+LR+ +G +I A  + +     +I  LE MA+ +GLRAI      PI+        +ESDS E + LL  +  D
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIR--------VESDSAEVVSLLRGEDTD

Query:  LTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES
         TEI W++ EI    +   +     + R AN  AH LARRA E+
Subjt:  LTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRASES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.4e-0525.2Show/hide
Query:  NVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNEIRYWQDS
        N DAS      + GLGW++RN +G ++  G      G  + +  E  A++  ++A +      +  E D++ V  L+  + +D   +   ++ I+ W  S
Subjt:  NVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNEIRYWQDS

Query:  GGVCDFVKVDRIANYCAHHLARRASES
            +F+   R  N CA  L ++A +S
Subjt:  GGVCDFVKVDRIANYCAHHLARRASES

AT2G02650.1 Ribonuclease H-like superfamily protein4.4e-0730.53Show/hide
Query:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLL-RGEDTDLTEIFWV
        PPP      N D+ ++        GW +R   G I+L GN  +     S+ A EA+  L  L+ I       +  ESDS  +V+L+  GED  L  +  +
Subjt:  PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLL-RGEDTDLTEIFWV

Query:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLA
        + +IR+W      C    V+R  N  A  LA
Subjt:  VNEIRYWQDSGGVCDFVKVDRIANYCAHHLA

AT4G29090.1 Ribonuclease H-like superfamily protein5.8e-0730.14Show/hide
Query:  PPLHTWA-LNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKA-LEAM--AVLKGLR-AINYLVTFPIRVESDSAEVVSLLRGED------
        PP H W   N DA+W+  ++  G+GWVLRN +G +   G +++    S ++A LEAM  AVL   R   NY++      ESDS  ++ +L  ++      
Subjt:  PPLHTWA-LNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKA-LEAM--AVLKGLR-AINYLVTFPIRVESDSAEVVSLLRGED------

Query:  ---TDLTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRA
            DL  +     E++          FV + R  N  A  +AR +
Subjt:  ---TDLTEIFWVVNEIRYWQDSGGVCDFVKVDRIANYCAHHLARRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTCCTCCCCTCCATACCTGGGCACTGAACGTTGATGCTTCTTGGTCGGCAGTTCATCAGATGGGCGGTCTCGGCTGGGTACTTCGGAACTGGGAGGGCGCTATTATTCT
TGCGGGGAACAAATCAGTGGATCACGGTCCTAGTAGCATCAAGGCATTGGAAGCTATGGCCGTTCTTAAAGGGCTTCGGGCGATTAACTATCTTGTGACTTTTCCAATCC
GAGTGGAATCTGATTCTGCGGAGGTAGTATCGCTCTTGAGAGGAGAAGATACCGATTTGACAGAAATTTTCTGGGTTGTTAATGAAATTCGTTATTGGCAAGATTCGGGT
GGGGTTTGTGATTTTGTAAAGGTTGATCGGATTGCGAATTACTGTGCCCATCACCTTGCGCGTCGTGCTTCAGAGAGTAGG
mRNA sequenceShow/hide mRNA sequence
CCTCCTCCCCTCCATACCTGGGCACTGAACGTTGATGCTTCTTGGTCGGCAGTTCATCAGATGGGCGGTCTCGGCTGGGTACTTCGGAACTGGGAGGGCGCTATTATTCT
TGCGGGGAACAAATCAGTGGATCACGGTCCTAGTAGCATCAAGGCATTGGAAGCTATGGCCGTTCTTAAAGGGCTTCGGGCGATTAACTATCTTGTGACTTTTCCAATCC
GAGTGGAATCTGATTCTGCGGAGGTAGTATCGCTCTTGAGAGGAGAAGATACCGATTTGACAGAAATTTTCTGGGTTGTTAATGAAATTCGTTATTGGCAAGATTCGGGT
GGGGTTTGTGATTTTGTAAAGGTTGATCGGATTGCGAATTACTGTGCCCATCACCTTGCGCGTCGTGCTTCAGAGAGTAGG
Protein sequenceShow/hide protein sequence
PPPLHTWALNVDASWSAVHQMGGLGWVLRNWEGAIILAGNKSVDHGPSSIKALEAMAVLKGLRAINYLVTFPIRVESDSAEVVSLLRGEDTDLTEIFWVVNEIRYWQDSG
GVCDFVKVDRIANYCAHHLARRASESR