; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015443 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015443
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationscaffold424:52425..53980
RNA-Seq ExpressionMS015443
SyntenyMS015443
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0048193 - Golgi vesicle transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0030008 - TRAPP complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]5.1e-6794Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDR+LS+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]3.0e-6794.67Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QTDRLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_022155216.1 mediator of RNA polymerase II transcription subunit 22b-like [Momordica charantia]7.6e-71100Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_023545554.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]6.7e-6794Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDR+LS+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]6.7e-6795.33Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QTDRLLS IGEEAA SLKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein1.5e-6794.67Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QTDRLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X25.5e-6794Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X15.5e-6794Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQA+QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A6J1DR20 mediator of RNA polymerase II transcription subunit 22b-like3.7e-71100Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like5.5e-6793.33Show/hide
Query:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT
        VEQRIVEFNQQAEQTDR++S+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 223.6e-1536.5Show/hide
Query:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST
          +     E+ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST

Q5E9K2 Mediator of RNA polymerase II transcription subunit 224.7e-1535.77Show/hide
Query:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ D+ +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST
          +     E+ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST

Q62276 Mediator of RNA polymerase II transcription subunit 223.6e-1536.5Show/hide
Query:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST
          +     E+ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b2.1e-5578.62Show/hide
Query:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI
        RI EF+Q+AE+T+RLL+RI ++A+ +LKELESHYYSS QR + +I
Subjt:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a1.8e-5476.19Show/hide
Query:  MNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+RLL+RI ++A+ SLKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.5e-5678.62Show/hide
Query:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI
        RI EF+Q+AE+T+RLL+RI ++A+ +LKELESHYYSS QR + +I
Subjt:  RIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNI

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.3e-5576.19Show/hide
Query:  MNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+RLL+RI ++A+ SLKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAGAGTTGAAACCGATATAGCCAACAT
TGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAATGCGTGCCGCCAGAATGGTTCAGG
CAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTTAACCAG
CAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTCTTCAACACAGAGGACGAGTCAAAA
CATTCTGACA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAGAGTTGAAACCGATATAGCCAACAT
TGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAATGCGTGCCGCCAGAATGGTTCAGG
CAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTTAACCAG
CAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTCTTCAACACAGAGGACGAGTCAAAA
CATTCTGACA
Protein sequenceShow/hide protein sequence
MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT