; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS015454 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015454
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationscaffold424:193722..194076
RNA-Seq ExpressionMS015454
SyntenyMS015454
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000114 - Ribosomal protein L16
IPR016180 - Ribosomal protein L10e/L16
IPR020798 - Ribosomal protein L16, conserved site
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QDK99983.1 ribosomal protein L16 [Siraitia grosvenorii]2.8e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

QJA16182.1 ribosomal protein L16 [Siraitia grosvenorii]2.8e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

YP_009674428.1 ribosomal protein L16 [Siraitia grosvenorii]2.8e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

YP_009752703.1 ribosomal protein L16 [Ampelosycios humblotii]2.8e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

YP_009752957.1 ribosomal protein L16 [Momordica sessilifolia]2.8e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

TrEMBL top hitse value%identityAlignment
A0A514YKW7 50S ribosomal protein L16, chloroplastic1.3e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

A0A515BLR4 50S ribosomal protein L16, chloroplastic1.3e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

A0A6C0UEP4 50S ribosomal protein L16, chloroplastic1.3e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

A0A6H0EU26 50S ribosomal protein L16, chloroplastic1.3e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

A0A6H0EX62 50S ribosomal protein L16, chloroplastic1.3e-5290.76Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

SwissProt top hitse value%identityAlignment
B1NWI7 50S ribosomal protein L16, chloroplastic2.0e-5387.39Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGI++RGNRICF RYA+QALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFI SG
Subjt:  VISIAASKMPIRTQFITSG

Q09ME0 50S ribosomal protein L16, chloroplastic1.7e-5286.55Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGN ICF RYA+QALEPAWIT RQIEAGRR MT N RRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEM GV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFI SG
Subjt:  VISIAASKMPIRTQFITSG

Q0ZIY1 50S ribosomal protein L16, chloroplastic2.0e-5387.39Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF RYA+QALEPAWIT RQIEAGRR MT N RRGGKIW  IFPDKPVT+RPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFI SG
Subjt:  VISIAASKMPIRTQFITSG

Q49KW1 50S ribosomal protein L16, chloroplastic4.5e-5386.55Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGNRICF +YA+QALEPAWIT RQIEAGRR MT N RRGGKIW  IFPDKPVT+RPT+TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFI SG
Subjt:  VISIAASKMPIRTQFITSG

Q4VZN1 50S ribosomal protein L16, chloroplastic9.0e-5489.08Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        MKGISYRGN ICF RYAIQALEPAWIT RQIEAGRR MT NARRGGKIW  IFPDKPVTLRPT+TRMGSGKGSPEYWVAVVKP  ILYEM GV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITSG
         ISIAASKMPIRTQFITSG
Subjt:  VISIAASKMPIRTQFITSG

Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 121.6e-3464.96Show/hide
Query:  KGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARKV
        KG+S +G  IC  RYA+Q LEPAWIT RQIEAGRR MT N  RG  +   IF DKPVT+RP +TRMG GKG+P +WVAVVKP  I+YEMGGV E +AR+ 
Subjt:  KGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARKV

Query:  ISIAASKMPIRTQFITS
        ISIAASK+P +T+FI S
Subjt:  ISIAASKMPIRTQFITS

ATCG00790.1 ribosomal protein L169.5e-5183.05Show/hide
Query:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK
        +KGIS RGNRICF RYA+Q LEPAWIT RQIEAGRR MT N RRGGKIW  IFPDKPVT+RP +TRMGSGKGSPEYWVAVVKP  ILYEMGGV ENIARK
Subjt:  MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT-NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGVVENIARK

Query:  VISIAASKMPIRTQFITS
         ISIAASKMPI+TQFI S
Subjt:  VISIAASKMPIRTQFITS

ATMG00080.1 ribosomal protein L161.2e-1637.4Show/hide
Query:  KGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT---------NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGV
        +G    G ++ F RY  ++ +   ++YR IEA RR +            RR GKIW  +F D P+T +PT+ RMG GKG+P  W+A V    I +EM GV
Subjt:  KGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMT---------NARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKP-NILYEMGGV

Query:  VENIARKVISIAASKMPIRTQFI
            AR+  ++AA K    T+F+
Subjt:  VENIARKVISIAASKMPIRTQFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGATAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATATAGACAAATCGAAGCAGGACGAAGGGT
AATGACAAATGCACGACGCGGAGGAAAAATATGGGAACCTATATTTCCAGACAAGCCTGTTACACTAAGACCTACACAAACACGGATGGGTTCAGGGAAAGGATCCCCCG
AATATTGGGTAGCTGTTGTTAAACCAAATATACTTTATGAAATGGGTGGAGTAGTAGAAAATATAGCCAGAAAAGTTATTTCAATAGCGGCGTCTAAAATGCCTATACGA
ACCCAATTTATTACTTCGGGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAATATCTTATCGAGGCAATCGTATTTGCTTCGATAGATACGCTATTCAGGCACTTGAACCCGCTTGGATCACATATAGACAAATCGAAGCAGGACGAAGGGT
AATGACAAATGCACGACGCGGAGGAAAAATATGGGAACCTATATTTCCAGACAAGCCTGTTACACTAAGACCTACACAAACACGGATGGGTTCAGGGAAAGGATCCCCCG
AATATTGGGTAGCTGTTGTTAAACCAAATATACTTTATGAAATGGGTGGAGTAGTAGAAAATATAGCCAGAAAAGTTATTTCAATAGCGGCGTCTAAAATGCCTATACGA
ACCCAATTTATTACTTCGGGA
Protein sequenceShow/hide protein sequence
MKGISYRGNRICFDRYAIQALEPAWITYRQIEAGRRVMTNARRGGKIWEPIFPDKPVTLRPTQTRMGSGKGSPEYWVAVVKPNILYEMGGVVENIARKVISIAASKMPIR
TQFITSG