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MS015490 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015490
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L16, chloroplastic
Genome locationscaffold468:161305..161453
RNA-Seq ExpressionMS015490
SyntenyMS015490
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6986757.1 hypothetical protein CFC21_004476 [Triticum aestivum]3.7e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
KAG5568935.1 hypothetical protein H5410_064058 [Solanum commersonii]4.8e-0657.41Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-----WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWITS  IEAG+  +        W+RIF DKPVIL+P +T M+S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-----WIRIFSDKPVILKPIKTCMNSRK
VAH11617.1 unnamed protein product [Triticum turgidum subsp. durum]3.7e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
VAH11618.1 unnamed protein product [Triticum turgidum subsp. durum]3.7e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
VAH11620.1 unnamed protein product [Triticum turgidum subsp. durum]3.7e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
TrEMBL top hitse value%identityAlignment
A0A3B5Y7U4 Ribosomal_L16 domain-containing protein1.8e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A0A446JEV0 Ribosomal_L16 domain-containing protein1.8e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A0A446JEV3 Ribosomal_L16 domain-containing protein1.8e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A0A446JEV6 Ribosomal_L16 domain-containing protein1.8e-0653.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +TCM S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A0A5A7TF88 Ribosomal protein L163.0e-0657.14Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YAIQALEPAWITS  IEAG+  +          W+RIFSDKPV L+P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
SwissProt top hitse value%identityAlignment
A1E9M8 50S ribosomal protein L16, chloroplastic1.2e-0751.79Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A1EA46 50S ribosomal protein L16, chloroplastic1.2e-0751.79Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWIT+  IEAG+  +          W+RIF DKPV L+P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
A7M9A0 50S ribosomal protein L16, plastid3.1e-0853.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWITS  IEAG+  +  K       W+RIF DKPV ++P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
Q4VZN1 50S ribosomal protein L16, chloroplastic3.1e-0855.36Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YAIQALEPAWITS  IEAG+  +          W+RIF DKPV L+P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
Q6EW14 50S ribosomal protein L16, chloroplastic7.0e-0853.57Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+QALEPAWITS  IEAG+  +          W+RIF DKPV L+P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
Arabidopsis top hitse value%identityAlignment
AT2G28830.1 PLANT U-BOX 121.1e-0544.64Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTV-------IYKWIRIFSDKPVILKPIKTCMNSRK
        YA+Q LEPAWITS  IEAG+  +       +   + IF+DKPV ++P +T M   K
Subjt:  YAIQALEPAWITSIPIEAGQMTV-------IYKWIRIFSDKPVILKPIKTCMNSRK
ATCG00790.1 ribosomal protein L162.5e-0850Show/hide
Query:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK
        YA+Q LEPAWITS  IEAG+  +          W+RIF DKPV ++P +T M S K
Subjt:  YAIQALEPAWITSIPIEAGQMTVIYK-------WIRIFSDKPVILKPIKTCMNSRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACGCTATTCAAGCACTTGAACCAGCTTGGATCACATCTATACCAATCGAAGCGGGACAAATGACAGTAATATATAAATGGATACGTATATTTTCAGACAAACCCGTTAT
ATTAAAACCTATAAAAACATGCATGAACTCAAGGAAA
mRNA sequenceShow/hide mRNA sequence
TACGCTATTCAAGCACTTGAACCAGCTTGGATCACATCTATACCAATCGAAGCGGGACAAATGACAGTAATATATAAATGGATACGTATATTTTCAGACAAACCCGTTAT
ATTAAAACCTATAAAAACATGCATGAACTCAAGGAAA
Protein sequenceShow/hide protein sequence
YAIQALEPAWITSIPIEAGQMTVIYKWIRIFSDKPVILKPIKTCMNSRK