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MS015493 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015493
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold468:186214..186546
RNA-Seq ExpressionMS015493
SyntenyMS015493
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU36089.1 hypothetical protein TSUD_277000 [Trifolium subterraneum]1.4e-0837.62Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        W  PP    KCN D A      K GIG+ FRD       A   TFP E++ +  +  A++ A+ LA   G  RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL

Query:  V
        +
Subjt:  V
GAU48087.1 hypothetical protein TSUD_238260 [Trifolium subterraneum]1.0e-0837.62Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        W  PP    KCN D A      K GIG+ FRD+      A   TFP E++    +  A++ A+ LA   G  RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL

Query:  V
        +
Subjt:  V
XP_022141766.1 uncharacterized protein LOC111012047 [Momordica charantia]2.3e-0850.75Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAAR
        W  P KG  K N DAA D R  + G+GV+ RDD+N + AA++++    SPL A++ AIREAVRLA R
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAAR
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]4.7e-0943Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATLV
        W  P  GV K NTDAA       SG+GV+ R+    +  AM+      +PL AK+LAIRE + LA RLG  RV+ E+DSL  + LI     W+GE  + V
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATLV
XP_024195872.1 uncharacterized protein LOC112199038 [Rosa chinensis]4.0e-0840Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQ-NFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        WS P  GV KCN D A  +   ++  G+VFR++  NFL AA        SP   +V+A+ E++RLA  L    V+FESD L++IQ +  D   + +I+TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQ-NFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
TrEMBL top hitse value%identityAlignment
A0A2Z6MC97 RNase H domain-containing protein1.9e-0837.62Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        W  PP    KCN D A      K GIG+ FRD       A   TFP E++ +  +  A++ A+ LA   G  RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL

Query:  V
        +
Subjt:  V
A0A2Z6NX36 Reverse transcriptase domain-containing protein6.6e-0937.62Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        W  PP    KCN D A      K GIG+ FRD       A   TFP E++ +  +  A++ A+ LA   G  RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL

Query:  V
        +
Subjt:  V
A0A2Z6PPU2 Reverse transcriptase domain-containing protein5.1e-0937.62Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
        W  PP    KCN D A      K GIG+ FRD+      A   TFP E++    +  A++ A+ LA   G  RVLFESD   V+  +R D  +  E+ TL
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFP-EISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL

Query:  V
        +
Subjt:  V
A0A6J1CK80 uncharacterized protein LOC1110120471.1e-0850.75Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAAR
        W  P KG  K N DAA D R  + G+GV+ RDD+N + AA++++    SPL A++ AIREAVRLA R
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAAR
A0A6J1DZK3 uncharacterized protein LOC1110249682.3e-0943Show/hide
Query:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATLV
        W  P  GV K NTDAA       SG+GV+ R+    +  AM+      +PL AK+LAIRE + LA RLG  RV+ E+DSL  + LI     W+GE  + V
Subjt:  WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-0832Show/hide
Query:  EVHVSVCWSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEW
        E ++SV W  PP    KCNTDA       + GIG + R++   +        P   + L A++ A+R AV   +R    R++FESD+  ++ L+  D  W
Subjt:  EVHVSVCWSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEW
AT4G29090.1 Ribonuclease H-like superfamily protein4.3e-0834.31Show/hide
Query:  EVHVSVC--WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDL
        +V+ S C  W  PP    KCNTDA  +    + GIG V R+++  ++       P++ S L A++ A+R AV   +R     V+FESDS ++I+++  D 
Subjt:  EVHVSVC--WSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEI-SPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDL

Query:  EW
         W
Subjt:  EW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAAGTTGATGAGGTACATGTTTCGGTTTGTTGGTCAATGCCTCCAAAAGGGGTCTTTAAATGTAACACTGATGCCGCGTGTGACTCTAGAAGAATGAAATCAGGGAT
CGGGGTTGTCTTTCGAGATGATCAAAATTTCCTTCAGGCGGCGATGCTAGCAACTTTCCCCGAAATATCCCCTCTCTCGGCTAAAGTGCTCGCGATTCGGGAGGCAGTTA
GGTTGGCAGCAAGGTTGGGGTGCCCCCGGGTGTTGTTTGAATCAGATTCTTTGATGGTAATACAATTGATTCGAGGCGATTTAGAGTGGCAAGGAGAAATTGCAACTTTG
GTT
mRNA sequenceShow/hide mRNA sequence
AAAAAAGTTGATGAGGTACATGTTTCGGTTTGTTGGTCAATGCCTCCAAAAGGGGTCTTTAAATGTAACACTGATGCCGCGTGTGACTCTAGAAGAATGAAATCAGGGAT
CGGGGTTGTCTTTCGAGATGATCAAAATTTCCTTCAGGCGGCGATGCTAGCAACTTTCCCCGAAATATCCCCTCTCTCGGCTAAAGTGCTCGCGATTCGGGAGGCAGTTA
GGTTGGCAGCAAGGTTGGGGTGCCCCCGGGTGTTGTTTGAATCAGATTCTTTGATGGTAATACAATTGATTCGAGGCGATTTAGAGTGGCAAGGAGAAATTGCAACTTTG
GTT
Protein sequenceShow/hide protein sequence
KKVDEVHVSVCWSMPPKGVFKCNTDAACDSRRMKSGIGVVFRDDQNFLQAAMLATFPEISPLSAKVLAIREAVRLAARLGCPRVLFESDSLMVIQLIRGDLEWQGEIATL
V