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MS015524 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015524
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDuplicated homeodomain-like superfamily protein
Genome locationscaffold300:260017..260295
RNA-Seq ExpressionMS015524
SyntenyMS015524
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7820441.1 transcription factor DIVARICATA-like [Senna tora]7.4e-1658.54Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ
        +LFLVG+  YGK +WR I++ VV+T+TP+QVASHAQKYFLRQ S G+K+ R RSSIHDITT+D  L+    +   PP  P Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ

KAG2310190.1 hypothetical protein Bca52824_021747 [Brassica carinata]1.4e-1463.24Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLL
        +LFL+G++ YGK +WR IA+ VV+T+TP+QVASHAQKYFLRQ S   K++R RSSIHDITT+D  L +
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLL

KMS97920.1 hypothetical protein BVRB_4g097390 [Beta vulgaris subsp. vulgaris]4.8e-1563.77Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ
        RLFL+G+E YGK +WR I++ VV+T+TP+QVASHAQKY+LRQ S   K++R RSSIHDITT+D +L  Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ

XP_002515769.1 transcription factor SRM1 [Ricinus communis]9.7e-1659.49Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE-LLLQVLASQHPPP
        RLFL+G+  YGK +WR I++ VV+T+TP+QVASHAQKYFLRQ S   K++R RSSIHDITT+D + + L +  S  PPP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE-LLLQVLASQHPPP

XP_010695074.1 PREDICTED: transcription factor DIVARICATA [Beta vulgaris subsp. vulgaris]4.8e-1563.77Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ
        RLFL+G+E YGK +WR I++ VV+T+TP+QVASHAQKY+LRQ S   K++R RSSIHDITT+D +L  Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ

TrEMBL top hitse value%identityAlignment
A0A0J8E475 Uncharacterized protein2.3e-1563.77Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ
        RLFL+G+E YGK +WR I++ VV+T+TP+QVASHAQKY+LRQ S   K++R RSSIHDITT+D +L  Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQ

A0A0K9Q782 Uncharacterized protein8.9e-1557.5Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQH--PPP
        RLFL+G+E YGK +WR I++ VV+T+TP+QVASHAQKY+LRQ S   K++R RSSIHDITT+D +  +     Q+  PPP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQH--PPP

A0A7C8ZAH3 Uncharacterized protein6.8e-1554.44Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQH--PPP----TPFQPP
        RLFL+G+E YGK +WR I++ VV+T+TP+QVASHAQKY+LRQ S   K++R RSSIHDITT+D +   +    Q+  PPP     P +PP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQH--PPP----TPFQPP

A0A7N0RD48 Uncharacterized protein1.2e-1464.62Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE
        RLFL+G++ YGK +WR I+++VV+T+TP+QVASHAQKYFLRQ S   K++R RSSIHDITT+D +
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE

B9RPV0 DNA binding protein, putative4.7e-1659.49Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE-LLLQVLASQHPPP
        RLFL+G+  YGK +WR I++ VV+T+TP+QVASHAQKYFLRQ S   K++R RSSIHDITT+D + + L +  S  PPP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE-LLLQVLASQHPPP

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS15.2e-1250Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ
        RLFL+G++ +GK +WR I++  V+++TP+QVASHAQKYF+R  S    + R RSSIHDIT++      QV A Q  P T  Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ

Q2V9B0 Transcription factor MYB1R19.8e-1154.1Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITT
        +LFL+G++  GK +WR I++  V T+TP+QVASHAQKYFLR+ +    ++R RSS+ DITT
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITT

Q8LH59 Transcription factor MYBS15.2e-1250Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ
        RLFL+G++ +GK +WR I++  V+++TP+QVASHAQKYF+R  S    + R RSSIHDIT++      QV A Q  P T  Q
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQ

Q8S9H7 Transcription factor DIVARICATA5.5e-1452.38Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQPP
        +LFL+G++ YGK +WR I++  V+T+TP+QVASHAQKYF+RQ S G K KR R+SIHDITT++      +  +Q P P   +PP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQPP

Q9FNN6 Transcription factor SRM13.6e-1358.06Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTI
        RLFL+G++ YGK +WR I++  V+T+TP+QVASHAQKYF+R  S    + R RSSIHDIT++
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTI

Arabidopsis top hitse value%identityAlignment
AT2G38090.1 Duplicated homeodomain-like superfamily protein2.0e-1452.94Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTID-PELLLQVLASQHPPPTPFQPP
        R FL+G++ YGK +WR IA+  V T+TP+QVASHAQKYF+RQ + G K KR RSSIHDITT++ P+      A       P  PP
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTID-PELLLQVLASQHPPPTPFQPP

AT5G01200.1 Duplicated homeodomain-like superfamily protein3.9e-1567.21Show/hide
Query:  FLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTID
        FL+G++ YGK +WR IAK  V T+TP+QVASHAQKYFLRQ + G K KR RSSIHDITT++
Subjt:  FLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTID

AT5G04760.1 Duplicated homeodomain-like superfamily protein3.8e-1861.76Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLL
        +LFL+G++ YGK +WR I++ VV+T+TP+QVASHAQKYFLRQ S   K++R RSSIHDITT+D  L +
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLL

AT5G08520.1 Duplicated homeodomain-like superfamily protein2.5e-1458.06Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTI
        RLFL+G++ YGK +WR I++  V+T+TP+QVASHAQKYF+R  S    + R RSSIHDIT++
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTI

AT5G58900.1 Homeodomain-like transcriptional regulator1.4e-1561.54Show/hide
Query:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE
        +LFL+G++ YGK +WR I++  V+T+TP+QVASHAQKYF+RQ S G K KR R+SIHDITT++ E
Subjt:  RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGCTATTTCTAGTGGGGATGGAGATATATGGGAAGAGTAATTGGAGAGAGATTGCAAAGAGAGTAGTGATGACAAAAACACCATCACAAGTGGCTAGTCATGCCCAAAA
GTACTTCCTCCGCCAGCAGTCAGCTGGCCAAAAGCAAAAGAGGTCGAGGTCGAGTATTCACGACATTACCACCATCGATCCTGAACTGTTGTTGCAAGTACTTGCAAGTC
AACACCCACCACCGACGCCATTTCAACCACCACCGCTGTCGGTGGTGCTGCCACAACAA
mRNA sequenceShow/hide mRNA sequence
AGGCTATTTCTAGTGGGGATGGAGATATATGGGAAGAGTAATTGGAGAGAGATTGCAAAGAGAGTAGTGATGACAAAAACACCATCACAAGTGGCTAGTCATGCCCAAAA
GTACTTCCTCCGCCAGCAGTCAGCTGGCCAAAAGCAAAAGAGGTCGAGGTCGAGTATTCACGACATTACCACCATCGATCCTGAACTGTTGTTGCAAGTACTTGCAAGTC
AACACCCACCACCGACGCCATTTCAACCACCACCGCTGTCGGTGGTGCTGCCACAACAA
Protein sequenceShow/hide protein sequence
RLFLVGMEIYGKSNWREIAKRVVMTKTPSQVASHAQKYFLRQQSAGQKQKRSRSSIHDITTIDPELLLQVLASQHPPPTPFQPPPLSVVLPQQ