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MS015525 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015525
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein s2
Genome locationscaffold300:264009..264146
RNA-Seq ExpressionMS015525
SyntenyMS015525
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000851 - Ribosomal protein S5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149390.2 40S ribosomal protein S2-4 [Cucumis sativus]7.9e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

XP_008443195.1 PREDICTED: 40S ribosomal protein S2-3-like [Cucumis melo]7.9e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

XP_008460763.1 PREDICTED: 40S ribosomal protein S2-4-like [Cucumis melo]7.9e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

XP_022935112.1 40S ribosomal protein S2-4-like [Cucurbita moschata]7.9e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

XP_023522607.1 40S ribosomal protein S2-4-like [Cucurbita pepo subsp. pepo]7.9e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

TrEMBL top hitse value%identityAlignment
A0A0A0KZQ4 S5 DRBM domain-containing protein3.8e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

A0A5A7ULX0 40S ribosomal protein S2-4-like3.8e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

A0A5D3DPL0 40S ribosomal protein S2-3-like3.8e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

A0A6J1DDV4 40S ribosomal protein S2-4-like3.8e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

E5GBY7 40S ribosomal protein s23.8e-1176.09Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK
        ATFDCLLK Y F+T +FWRET FTK PFQEHTDLLA PT K LLL+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK

SwissProt top hitse value%identityAlignment
P49688 40S ribosomal protein S2-33.8e-0857.14Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKT
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD LA+    T
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKT

Q8L8Y0 40S ribosomal protein S2-11.9e-0761.11Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD L+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

Q90YS3 40S ribosomal protein S24.0e-0558.33Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFD + K Y ++T D W+ET FTK P+QE TD LA
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

Q93VB8 40S ribosomal protein S2-21.9e-0761.11Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD L+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

Q9SCM3 40S ribosomal protein S2-43.8e-0863.16Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANP
        ATFDCL K Y F+T +FW+ET F+K P+QEHTD L  P
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANP

Arabidopsis top hitse value%identityAlignment
AT1G58380.1 Ribosomal protein S5 family protein1.3e-0861.11Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD L+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

AT1G58983.1 Ribosomal protein S5 family protein1.3e-0861.11Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD L+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

AT1G59359.1 Ribosomal protein S5 family protein1.3e-0861.11Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD L+
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLA

AT2G41840.1 Ribosomal protein S5 family protein2.7e-0957.14Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKT
        ATFDCL K Y F+T +FW+ET F++ P+QEHTD LA+    T
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKT

AT3G57490.1 Ribosomal protein S5 family protein2.7e-0963.16Show/hide
Query:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANP
        ATFDCL K Y F+T +FW+ET F+K P+QEHTD L  P
Subjt:  ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAACTTTTGATTGTCTGCTGAAAATCTATGACTTCATGACATATGACTTTTGGAGGGAGACACACTTCACAAAATTTCCATTTCAAGAGCACACAGATTTATTGGCGAA
TCCCACTAGCAAGACATTGTTGTTGAAA
mRNA sequenceShow/hide mRNA sequence
GCAACTTTTGATTGTCTGCTGAAAATCTATGACTTCATGACATATGACTTTTGGAGGGAGACACACTTCACAAAATTTCCATTTCAAGAGCACACAGATTTATTGGCGAA
TCCCACTAGCAAGACATTGTTGTTGAAA
Protein sequenceShow/hide protein sequence
ATFDCLLKIYDFMTYDFWRETHFTKFPFQEHTDLLANPTSKTLLLK