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MS015526 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015526
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationscaffold300:265209..265325
RNA-Seq ExpressionMS015526
SyntenyMS015526
Gene Ontology termsGO:0006306 - DNA methylation (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016604 - nuclear body (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601940.1 DNA-directed RNA polymerase V subunit 1, partial [Cucurbita argyrosperma subsp. sororia]3.2e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
KAG7032636.1 DNA-directed RNA polymerase V subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
XP_022953816.1 DNA-directed RNA polymerase V subunit 1 [Cucurbita moschata]3.2e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
XP_023517905.1 DNA-directed RNA polymerase V subunit 1 [Cucurbita pepo subsp. pepo]3.2e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
XP_038874337.1 DNA-directed RNA polymerase V subunit 1 [Benincasa hispida]3.2e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
TrEMBL top hitse value%identityAlignment
A0A0A0KN85 DNA-directed RNA polymerase subunit1.1e-1184.62Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSL+E FWDFLERYGFRYG N TRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
A0A1S3CPU1 DNA-directed RNA polymerase subunit1.1e-1184.62Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSL+E FWDFLERYGFRYG N TRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
A0A6J1CY08 DNA-directed RNA polymerase subunit5.9e-1389.74Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRT LREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
A0A6J1GP51 DNA-directed RNA polymerase subunit1.6e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
A0A6J1JRG8 DNA-directed RNA polymerase subunit1.6e-1392.31Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        LQ+KVPSRTSLREGFWDFLERYGFRYG NLTRT LPCEV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
SwissProt top hitse value%identityAlignment
Q5D869 DNA-directed RNA polymerase V subunit 12.7e-0756.41Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        L++K+PSR+ L+ G W+FLERYG+RYG + TR  L  EV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
Arabidopsis top hitse value%identityAlignment
AT2G40030.1 nuclear RNA polymerase D1B2.0e-0856.41Show/hide
Query:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV
        L++K+PSR+ L+ G W+FLERYG+RYG + TR  L  EV
Subjt:  LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCAAGTAAAAGTACCATCCAGGACATCACTACGAGAAGGATTTTGGGATTTCTTAGAAAGATATGGTTTTCGTTATGGTGGTAATCTCACTCGAACTTTTCTCCCCTG
CGAGGTT
mRNA sequenceShow/hide mRNA sequence
CTTCAAGTAAAAGTACCATCCAGGACATCACTACGAGAAGGATTTTGGGATTTCTTAGAAAGATATGGTTTTCGTTATGGTGGTAATCTCACTCGAACTTTTCTCCCCTG
CGAGGTT
Protein sequenceShow/hide protein sequence
LQVKVPSRTSLREGFWDFLERYGFRYGGNLTRTFLPCEV