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MS015535 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015535
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S23-like
Genome locationscaffold300:380811..381111
RNA-Seq ExpressionMS015535
SyntenyMS015535
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFQ07780.1 40S ribosomal protein s23 [Phtheirospermum japonicum]2.6e-3073.58Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I   +P+        GCLNYIEENDE LIAG G KGHAVGDIP V FKVV      LLALFKEK
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK

Query:  KEKPRS
        KEKPRS
Subjt:  KEKPRS

KAG6669925.1 hypothetical protein CIPAW_01G276600 [Carya illinoinensis]1.7e-2969.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSH+GNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K  H+ LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

KCW49709.1 hypothetical protein EUGRSUZ_K03211 [Eucalyptus grandis]4.4e-3073.58Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   +       GCLNYIEENDE LIAG G KGHAVGDIP V FKVV      LLALFKEK
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK

Query:  KEKPRS
        KEKPRS
Subjt:  KEKPRS

XP_022145774.1 40S ribosomal protein S23-like [Momordica charantia]6.7e-3170.94Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLI-----------NEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV---
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI           NEIYGCLN IEENDE LIAG G KGHAVGDIP V FKVV   
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLI-----------NEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV---

Query:  ---LLALFKEKKEKPRS
           LLALFKEKKEKPRS
Subjt:  ---LLALFKEKKEKPRS

XP_042971421.1 40S ribosomal protein S23-like [Carya illinoinensis]1.7e-2969.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSH+GNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K  H+ LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

TrEMBL top hitse value%identityAlignment
A0A059A7I0 Uncharacterized protein4.0e-2969.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

A0A059A7J6 Uncharacterized protein2.1e-3073.58Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   +       GCLNYIEENDE LIAG G KGHAVGDIP V FKVV      LLALFKEK
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV------LLALFKEK

Query:  KEKPRS
        KEKPRS
Subjt:  KEKPRS

A0A6J1CW97 40S ribosomal protein S23-like3.3e-3170.94Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLI-----------NEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV---
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI           NEIYGCLN IEENDE LIAG G KGHAVGDIP V FKVV   
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLI-----------NEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV---

Query:  ---LLALFKEKKEKPRS
           LLALFKEKKEKPRS
Subjt:  ---LLALFKEKKEKPRS

A0A6J1KCN2 40S ribosomal protein S234.0e-2969.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

C6TDD7 Uncharacterized protein3.1e-2969.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE-----IY----GCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI       ++    GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE-----IY----GCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S231.1e-3169.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

P49201 40S ribosomal protein S23-21.1e-3169.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

Q86FP7 40S ribosomal protein S234.0e-2659.48Show/hide
Query:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV----
        K+HLG   K  PF G+SHAKGIVLEK+G+EAKQ N  I  K   + LI             GCLNYIEENDE L+AG G KGHAVGDIP V FKVV    
Subjt:  KSHLGNEGK-KPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV----

Query:  --LLALFKEKKEKPRS
          LLAL+KEKKE+PRS
Subjt:  --LLALFKEKKEKPRS

Q9M5Z9 40S ribosomal protein S231.1e-3169.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

Q9SF35 40S ribosomal protein S23-13.8e-2966.96Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein2.7e-3066.96Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KS+ GNE KKPFA SSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS

AT5G02960.1 Ribosomal protein S12/S23 family protein7.7e-3369.57Show/hide
Query:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----
        KSHLGNE KKPFAGSSHAKGIVLEKIGIEAKQ N  I  K   + LI             GCLNYIEENDE LIAG G KGHAVGDIP V FKVV     
Subjt:  KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINE---------IYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVV-----

Query:  -LLALFKEKKEKPRS
         LLALFKEKKEKPRS
Subjt:  -LLALFKEKKEKPRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATGATGGTAT
TGAAACAAAATTGCCGCATTTGTGCCTAATTAATGAGATATATGGTTGTCTTAACTACATTGAGGAGAATGATGAAGAATTGATTGCCGGATTGGGTTGTAAAGGACATG
CCGTCGGAGATATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCCAAGGTCT
mRNA sequenceShow/hide mRNA sequence
AAGTCTCACCTTGGAAATGAAGGGAAGAAGCCATTTGCCGGTTCTTCTCATGCAAAAGGCATTGTTTTGGAAAAGATTGGTATTGAGGCTAAGCAGACAAATGATGGTAT
TGAAACAAAATTGCCGCATTTGTGCCTAATTAATGAGATATATGGTTGTCTTAACTACATTGAGGAGAATGATGAAGAATTGATTGCCGGATTGGGTTGTAAAGGACATG
CCGTCGGAGATATTCCTGATGTTGGATTCAAGGTTGTCCTCCTTGCACTTTTTAAGGAAAAGAAGGAGAAGCCAAGGTCT
Protein sequenceShow/hide protein sequence
KSHLGNEGKKPFAGSSHAKGIVLEKIGIEAKQTNDGIETKLPHLCLINEIYGCLNYIEENDEELIAGLGCKGHAVGDIPDVGFKVVLLALFKEKKEKPRS