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MS015539 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS015539
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor DIVARICATA-like
Genome locationscaffold300:393050..393322
RNA-Seq ExpressionMS015539
SyntenyMS015539
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8692976.1 Transcription factor DIVARICATA [Hibiscus syriacus]1.9e-1154.17Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH
        RLF++G+ +YGKG+W+ I+  +VVT+TSTQVASHAQKY+          RQ +GK  R +SSI +ITTVD H
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH

XP_021730551.1 transcription factor SRM1-like [Chenopodium quinoa]2.2e-1250.57Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQP
        RLF++G+E+YGKG+W+ I+  +VVT+T TQVASHAQKYY          RQ +GK  R +SSI +ITTVD  S AR   + +   QP
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQP

XP_022145130.1 transcription factor DIVARICATA-like [Momordica charantia]3.8e-2570.65Show/hide
Query:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDH--ALTVQPPLPP
        LF+MG+E+YG GNWK+IAT+ VVT+TSTQVASHAQKY  Y QNPN N  QRNGKS RSKSSIF+IT VDPHS+ RLLR       +QPPLPP
Subjt:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDH--ALTVQPPLPP

XP_022145147.1 uncharacterized protein LOC111014661 [Momordica charantia]1.4e-2268.89Show/hide
Query:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHA--LTVQPPL
        LF++G E+YGKGNWK+I+TKM VTKTSTQV SHAQKY+ Y+QNP  NS+QRNGKS  SKSSIF IT VDPHS A LLR       +QPPL
Subjt:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHA--LTVQPPL

XP_039012789.1 transcription factor DIVARICATA-like [Hibiscus syriacus]1.9e-1154.17Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH
        RLF++G+ +YGKG+W+ I+  +VVT+TSTQVASHAQKY+          RQ +GK  R +SSI +ITTVD H
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH

TrEMBL top hitse value%identityAlignment
A0A6A2ZN51 Transcription factor DIVARICATA9.0e-1254.17Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH
        RLF++G+ +YGKG+W+ I+  +VVT+TSTQVASHAQKY+          RQ +GK  R +SSI +ITTVD H
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPH

A0A6J1CTL3 transcription factor DIVARICATA-like1.9e-2570.65Show/hide
Query:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDH--ALTVQPPLPP
        LF+MG+E+YG GNWK+IAT+ VVT+TSTQVASHAQKY  Y QNPN N  QRNGKS RSKSSIF+IT VDPHS+ RLLR       +QPPLPP
Subjt:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDH--ALTVQPPLPP

A0A6J1CVN6 uncharacterized protein LOC1110146616.6e-2368.89Show/hide
Query:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHA--LTVQPPL
        LF++G E+YGKGNWK+I+TKM VTKTSTQV SHAQKY+ Y+QNP  NS+QRNGKS  SKSSIF IT VDPHS A LLR       +QPPL
Subjt:  LFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHA--LTVQPPL

A0A7C8ZAH3 Uncharacterized protein1.2e-1145Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRD---------HALTVQPPLPP
        RLF++G+E+YGKG+W+ I+  +VVT+T TQVASHAQKYY          RQ +GK  R +SSI +ITTVD  + AR   +         +++  +PPL P
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRD---------HALTVQPPLPP

A0A803N8C1 Uncharacterized protein1.1e-1250.57Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQP
        RLF++G+E+YGKG+W+ I+  +VVT+T TQVASHAQKYY          RQ +GK  R +SSI +ITTVD  S AR   + +   QP
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQP

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS12.6e-0844.93Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV
        RLF++G++++GKG+W+ I+   V+++T TQVASHAQKY+        NS  R+    R +SSI +IT+V
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV

Q2V9B0 Transcription factor MYB1R13.4e-0844.12Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITT
        +LF++G+++ GKG+W+ I+   V T+T TQVASHAQKY+          R+ N    R +SS+F+ITT
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITT

Q8LH59 Transcription factor MYBS12.6e-0844.93Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV
        RLF++G++++GKG+W+ I+   V+++T TQVASHAQKY+        NS  R+    R +SSI +IT+V
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV

Q8S9H7 Transcription factor DIVARICATA1.6e-1045.71Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD
        +LF+MG+++YGKG+W++I+   V+T+T TQVASHAQKY+          RQ +G   + ++SI +ITTV+
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD

Q9FNN6 Transcription factor SRM12.4e-0946.38Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV
        RLF++G+++YGKG+W+ I+   VVT+T TQVASHAQKY+          R  +    R +SSI +IT+V
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTV

Arabidopsis top hitse value%identityAlignment
AT1G74840.1 Homeodomain-like superfamily protein1.3e-1040.7Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQ
        +LF++G++R GKG+WK I+   V T+TSTQVASHAQKY+          R+ N    R +SS+F++TT    +   +  DH + +Q
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQ

AT1G74840.2 Homeodomain-like superfamily protein1.3e-1040.7Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQ
        +LF++G++R GKG+WK I+   V T+TSTQVASHAQKY+          R+ N    R +SS+F++TT    +   +  DH + +Q
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQ

AT2G38090.1 Duplicated homeodomain-like superfamily protein3.6e-1345.65Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD-PHSKARLLRDHALTVQPPLPP
        R F+MG+++YGKG+W++IA   V T+T TQVASHAQKY+          RQ NG   + +SSI +ITTV+ P S      D+A    P  PP
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD-PHSKARLLRDHALTVQPPLPP

AT5G04760.1 Duplicated homeodomain-like superfamily protein2.8e-1345.16Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD-----PHSKARLLRDHALTVQPP
        +LF++G++RYGKG+W+ I+  +VVT+T TQVASHAQKY+          RQ + K  R +SSI +ITTVD     P S       H   VQ P
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVD-----PHSKARLLRDHALTVQPP

AT5G58900.1 Homeodomain-like transcriptional regulator4.0e-1244.16Show/hide
Query:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARL
        +LF+MG+++YGKG+W++I+   V+T+T TQVASHAQKY+          RQ +G   + ++SI +ITTV+   +A L
Subjt:  RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGTTATTTGTGATGGGAGTTGAGAGGTATGGAAAAGGAAATTGGAAAGATATTGCGACAAAAATGGTGGTCACAAAAACATCCACACAGGTGGCAAGCCATGCCCAAAA
GTACTACGACTATCACCAAAACCCTAATTCTAATTCAAGACAGCGAAATGGGAAGAGTGGCAGATCTAAGTCTAGTATTTTCGAGATCACCACCGTAGATCCCCACTCCA
AGGCACGCCTGCTTCGCGATCATGCACTCACTGTTCAACCACCGTTGCCGCCG
mRNA sequenceShow/hide mRNA sequence
AGGTTATTTGTGATGGGAGTTGAGAGGTATGGAAAAGGAAATTGGAAAGATATTGCGACAAAAATGGTGGTCACAAAAACATCCACACAGGTGGCAAGCCATGCCCAAAA
GTACTACGACTATCACCAAAACCCTAATTCTAATTCAAGACAGCGAAATGGGAAGAGTGGCAGATCTAAGTCTAGTATTTTCGAGATCACCACCGTAGATCCCCACTCCA
AGGCACGCCTGCTTCGCGATCATGCACTCACTGTTCAACCACCGTTGCCGCCG
Protein sequenceShow/hide protein sequence
RLFVMGVERYGKGNWKDIATKMVVTKTSTQVASHAQKYYDYHQNPNSNSRQRNGKSGRSKSSIFEITTVDPHSKARLLRDHALTVQPPLPP